| Full name: PCGEM1 prostate-specific transcript | Alias Symbol: NCRNA00071|LINC00071|PCAT9 | ||
| Type: non-coding RNA | Cytoband: 2q32.3 | ||
| Entrez ID: 64002 | HGNC ID: HGNC:30145 | Ensembl Gene: ENSG00000227418 | OMIM ID: 605443 |
| Drug and gene relationship at DGIdb | |||
Expression of PCGEM1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | PCGEM1 | 64002 | 234515_at | -0.0859 | 0.8382 | |
| GSE26886 | PCGEM1 | 64002 | 234515_at | -0.0990 | 0.3611 | |
| GSE45670 | PCGEM1 | 64002 | 234515_at | 0.0088 | 0.9535 | |
| GSE53622 | PCGEM1 | 64002 | 39078 | 0.0828 | 0.4392 | |
| GSE53624 | PCGEM1 | 64002 | 39078 | 0.0244 | 0.7948 | |
| GSE63941 | PCGEM1 | 64002 | 234515_at | 0.1154 | 0.5923 | |
| GSE77861 | PCGEM1 | 64002 | 234515_at | -0.1306 | 0.1794 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by PCGEM1 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of PCGEM1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | PCGEM1 | 64002 | 8 | 3 | 19 | |
| GSE20123 | PCGEM1 | 64002 | 8 | 3 | 19 | |
| GSE43470 | PCGEM1 | 64002 | 3 | 1 | 39 | |
| GSE46452 | PCGEM1 | 64002 | 1 | 4 | 54 | |
| GSE47630 | PCGEM1 | 64002 | 4 | 5 | 31 | |
| GSE54993 | PCGEM1 | 64002 | 0 | 5 | 65 | |
| GSE54994 | PCGEM1 | 64002 | 12 | 6 | 35 | |
| GSE60625 | PCGEM1 | 64002 | 0 | 3 | 8 | |
| GSE74703 | PCGEM1 | 64002 | 2 | 1 | 33 | |
| GSE74704 | PCGEM1 | 64002 | 3 | 2 | 15 | |
| TCGA | PCGEM1 | 64002 | 23 | 8 | 65 |
Total number of gains: 64; Total number of losses: 41; Total Number of normals: 383.
Somatic mutations of PCGEM1:
Generating mutation plots.
Highly correlated genes for PCGEM1:
Showing top 20/108 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| PCGEM1 | TMEM169 | 0.707947 | 3 | 0 | 3 |
| PCGEM1 | OR10H3 | 0.689538 | 4 | 0 | 4 |
| PCGEM1 | GAB4 | 0.677946 | 3 | 0 | 3 |
| PCGEM1 | A1CF | 0.677489 | 3 | 0 | 3 |
| PCGEM1 | EPHA5-AS1 | 0.665383 | 3 | 0 | 3 |
| PCGEM1 | ZGLP1 | 0.66529 | 4 | 0 | 4 |
| PCGEM1 | LINC00408 | 0.659166 | 3 | 0 | 3 |
| PCGEM1 | C8B | 0.649573 | 5 | 0 | 4 |
| PCGEM1 | ASCL3 | 0.646158 | 3 | 0 | 3 |
| PCGEM1 | KIF12 | 0.641851 | 3 | 0 | 3 |
| PCGEM1 | CAMK2A | 0.636349 | 4 | 0 | 4 |
| PCGEM1 | CIB4 | 0.631591 | 3 | 0 | 3 |
| PCGEM1 | ATP13A5 | 0.623973 | 3 | 0 | 3 |
| PCGEM1 | MIR4755 | 0.621566 | 4 | 0 | 4 |
| PCGEM1 | CNR1 | 0.61496 | 3 | 0 | 3 |
| PCGEM1 | CLRN1 | 0.610854 | 4 | 0 | 4 |
| PCGEM1 | PSG6 | 0.610303 | 3 | 0 | 3 |
| PCGEM1 | RNF208 | 0.608417 | 3 | 0 | 3 |
| PCGEM1 | RANBP3L | 0.608172 | 3 | 0 | 3 |
| PCGEM1 | CCDC30 | 0.605689 | 5 | 0 | 4 |
For details and further investigation, click here
