LINC00309

 

Full name: long intergenic non-protein coding RNA 309 Alias Symbol: 
Type: non-coding RNA Cytoband: 2p14
Entrez ID: 150992 HGNC ID: HGNC:25279 Ensembl Gene: ENSG00000230923 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC00309:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00309 150992 234847_at -0.0731 0.6938
GSE26886 LINC00309 150992 234847_at 0.0744 0.4207
GSE45670 LINC00309 150992 234847_at 0.0345 0.6834
GSE53622 LINC00309 150992 70217 -0.2172 0.0291
GSE53624 LINC00309 150992 66289 -0.0239 0.8200
GSE63941 LINC00309 150992 234847_at -0.0920 0.4575
GSE77861 LINC00309 150992 234847_at -0.1002 0.1628

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by LINC00309 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of LINC00309:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00309 150992 12 0 18
GSE20123 LINC00309 150992 12 0 18
GSE43470 LINC00309 150992 6 0 37
GSE46452 LINC00309 150992 2 3 54
GSE47630 LINC00309 150992 8 0 32
GSE54993 LINC00309 150992 0 6 64
GSE54994 LINC00309 150992 12 0 41
GSE60625 LINC00309 150992 0 3 8
GSE74703 LINC00309 150992 6 0 30
GSE74704 LINC00309 150992 10 0 10
TCGA LINC00309 150992 36 2 58

Total number of gains: 104; Total number of losses: 14; Total Number of normals: 370.  

 

Somatic mutations of LINC00309:

 

Generating mutation plots.

 

Highly correlated genes for LINC00309:

 

Showing all 11 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00309LINC004740.653918303
LINC00309NNAT0.63419303
LINC00309DACT30.611145303
LINC00309SERPINA50.608749303
LINC00309KCND30.598527303
LINC00309PLK50.592371303
LINC00309TYR0.568344303
LINC00309ADRB30.557893303
LINC00309HS6ST30.54924303
LINC00309SCN4B0.545208403
LINC00309LINC011870.51567303

For details and further investigation, click here