| Full name: long intergenic non-protein coding RNA 474 | Alias Symbol: EST-YD1 | ||
| Type: non-coding RNA | Cytoband: 9q33.1 | ||
| Entrez ID: 58483 | HGNC ID: HGNC:23367 | Ensembl Gene: ENSG00000204148 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00474:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00474 | 58483 | 1570345_at | -0.0600 | 0.7815 | |
| GSE20347 | LINC00474 | 58483 | 220660_at | 0.0340 | 0.6457 | |
| GSE23400 | LINC00474 | 58483 | 220660_at | -0.0966 | 0.0361 | |
| GSE26886 | LINC00474 | 58483 | 220660_at | 0.1908 | 0.0466 | |
| GSE29001 | LINC00474 | 58483 | 220660_at | -0.1716 | 0.2230 | |
| GSE38129 | LINC00474 | 58483 | 220660_at | -0.0604 | 0.4390 | |
| GSE45670 | LINC00474 | 58483 | 220660_at | -0.0322 | 0.7203 | |
| GSE53622 | LINC00474 | 58483 | 53703 | -0.1118 | 0.2031 | |
| GSE53624 | LINC00474 | 58483 | 73731 | 0.3435 | 0.0002 | |
| GSE63941 | LINC00474 | 58483 | 220660_at | 0.1853 | 0.1673 | |
| GSE77861 | LINC00474 | 58483 | 220660_at | -0.1376 | 0.2480 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00474 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00474:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00474 | 58483 | 5 | 10 | 15 | |
| GSE20123 | LINC00474 | 58483 | 5 | 10 | 15 | |
| GSE43470 | LINC00474 | 58483 | 4 | 3 | 36 | |
| GSE46452 | LINC00474 | 58483 | 6 | 13 | 40 | |
| GSE47630 | LINC00474 | 58483 | 3 | 16 | 21 | |
| GSE54993 | LINC00474 | 58483 | 3 | 3 | 64 | |
| GSE54994 | LINC00474 | 58483 | 9 | 11 | 33 | |
| GSE60625 | LINC00474 | 58483 | 0 | 0 | 11 | |
| GSE74703 | LINC00474 | 58483 | 4 | 3 | 29 | |
| GSE74704 | LINC00474 | 58483 | 2 | 7 | 11 | |
| TCGA | LINC00474 | 58483 | 28 | 21 | 47 |
Total number of gains: 69; Total number of losses: 97; Total Number of normals: 322.
Somatic mutations of LINC00474:
Generating mutation plots.
Highly correlated genes for LINC00474:
Showing top 20/789 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00474 | SLC6A5 | 0.719485 | 4 | 0 | 4 |
| LINC00474 | STXBP6 | 0.718142 | 3 | 0 | 3 |
| LINC00474 | UBE2D4 | 0.717126 | 3 | 0 | 3 |
| LINC00474 | SCGB1D1 | 0.698505 | 3 | 0 | 3 |
| LINC00474 | KLRG1 | 0.696974 | 5 | 0 | 5 |
| LINC00474 | APOA1 | 0.695822 | 3 | 0 | 3 |
| LINC00474 | PRODH2 | 0.69552 | 5 | 0 | 5 |
| LINC00474 | SCGN | 0.695122 | 4 | 0 | 4 |
| LINC00474 | CCL1 | 0.690758 | 4 | 0 | 4 |
| LINC00474 | C8A | 0.690405 | 4 | 0 | 4 |
| LINC00474 | CACNB1 | 0.689185 | 4 | 0 | 4 |
| LINC00474 | HAP1 | 0.689034 | 5 | 0 | 5 |
| LINC00474 | LINC01364 | 0.688976 | 3 | 0 | 3 |
| LINC00474 | KLF1 | 0.687509 | 3 | 0 | 3 |
| LINC00474 | FGF6 | 0.684309 | 3 | 0 | 3 |
| LINC00474 | NEUROD4 | 0.682128 | 4 | 0 | 4 |
| LINC00474 | EDA2R | 0.681606 | 5 | 0 | 5 |
| LINC00474 | SLC10A2 | 0.681237 | 6 | 0 | 6 |
| LINC00474 | KIR2DL2 | 0.679333 | 4 | 0 | 4 |
| LINC00474 | GML | 0.679224 | 6 | 0 | 6 |
For details and further investigation, click here
