| Full name: long intergenic non-protein coding RNA 638 | Alias Symbol: MGC23270 | ||
| Type: non-coding RNA | Cytoband: 14q32.33 | ||
| Entrez ID: 196872 | HGNC ID: HGNC:28325 | Ensembl Gene: ENSG00000258701 | OMIM ID: |
Expression of LINC00638:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00638 | 196872 | 1553780_at | -0.0737 | 0.7403 | |
| GSE26886 | LINC00638 | 196872 | 1553780_at | -0.0216 | 0.8932 | |
| GSE45670 | LINC00638 | 196872 | 1553780_at | 0.1014 | 0.1458 | |
| GSE53622 | LINC00638 | 196872 | 20420 | 0.5850 | 0.0000 | |
| GSE53624 | LINC00638 | 196872 | 20420 | 0.5245 | 0.0000 | |
| GSE63941 | LINC00638 | 196872 | 1553780_at | 0.5379 | 0.0095 | |
| GSE77861 | LINC00638 | 196872 | 1553780_at | 0.0131 | 0.9112 | |
| SRP133303 | LINC00638 | 196872 | RNAseq | 0.2524 | 0.3086 | |
| SRP219564 | LINC00638 | 196872 | RNAseq | 0.7854 | 0.0955 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00638 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00638:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00638 | 196872 | 11 | 3 | 16 | |
| GSE20123 | LINC00638 | 196872 | 10 | 2 | 18 | |
| GSE43470 | LINC00638 | 196872 | 6 | 4 | 33 | |
| GSE46452 | LINC00638 | 196872 | 19 | 4 | 36 | |
| GSE47630 | LINC00638 | 196872 | 10 | 8 | 22 | |
| GSE54993 | LINC00638 | 196872 | 4 | 10 | 56 | |
| GSE54994 | LINC00638 | 196872 | 20 | 4 | 29 | |
| GSE60625 | LINC00638 | 196872 | 0 | 2 | 9 | |
| GSE74703 | LINC00638 | 196872 | 5 | 3 | 28 | |
| GSE74704 | LINC00638 | 196872 | 5 | 2 | 13 | |
| TCGA | LINC00638 | 196872 | 32 | 18 | 46 |
Total number of gains: 122; Total number of losses: 60; Total Number of normals: 306.
Somatic mutations of LINC00638:
Generating mutation plots.
Highly correlated genes for LINC00638:
Showing all 13 correlated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00638 | MPV17L | 0.627566 | 3 | 0 | 3 |
| LINC00638 | SLC29A2 | 0.577522 | 4 | 0 | 3 |
| LINC00638 | RAB4B | 0.573149 | 3 | 0 | 3 |
| LINC00638 | TAT | 0.557563 | 3 | 0 | 3 |
| LINC00638 | DBF4B | 0.54746 | 3 | 0 | 3 |
| LINC00638 | UTS2R | 0.541705 | 4 | 0 | 3 |
| LINC00638 | CA14 | 0.539645 | 4 | 0 | 3 |
| LINC00638 | RTP3 | 0.536829 | 4 | 0 | 3 |
| LINC00638 | TMPRSS6 | 0.530594 | 4 | 0 | 3 |
| LINC00638 | TSSK3 | 0.52466 | 4 | 0 | 3 |
| LINC00638 | UGT3A1 | 0.522749 | 4 | 0 | 3 |
| LINC00638 | SDK2 | 0.506085 | 5 | 0 | 3 |
| LINC00638 | LRRC43 | 0.501906 | 4 | 0 | 3 |
For details and further investigation, click here
