| Full name: VPS13A antisense RNA 1 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 9q21.2 | ||
| Entrez ID: 100286938 | HGNC ID: HGNC:44167 | Ensembl Gene: ENSG00000232998 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of VPS13A-AS1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | VPS13A-AS1 | 100286938 | 240767_x_at | 0.1452 | 0.4869 | |
| GSE26886 | VPS13A-AS1 | 100286938 | 240767_x_at | 0.0690 | 0.6569 | |
| GSE45670 | VPS13A-AS1 | 100286938 | 240767_x_at | 0.0824 | 0.4544 | |
| GSE53622 | VPS13A-AS1 | 100286938 | 21216 | -0.2363 | 0.0048 | |
| GSE53624 | VPS13A-AS1 | 100286938 | 21216 | -0.5118 | 0.0000 | |
| GSE63941 | VPS13A-AS1 | 100286938 | 240767_x_at | 0.0867 | 0.5852 | |
| GSE77861 | VPS13A-AS1 | 100286938 | 240767_x_at | -0.1975 | 0.1779 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by VPS13A-AS1 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of VPS13A-AS1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | VPS13A-AS1 | 100286938 | 6 | 10 | 14 | |
| GSE20123 | VPS13A-AS1 | 100286938 | 6 | 10 | 14 | |
| GSE43470 | VPS13A-AS1 | 100286938 | 6 | 5 | 32 | |
| GSE46452 | VPS13A-AS1 | 100286938 | 6 | 14 | 39 | |
| GSE47630 | VPS13A-AS1 | 100286938 | 1 | 18 | 21 | |
| GSE54993 | VPS13A-AS1 | 100286938 | 4 | 2 | 64 | |
| GSE54994 | VPS13A-AS1 | 100286938 | 4 | 12 | 37 | |
| GSE60625 | VPS13A-AS1 | 100286938 | 0 | 0 | 11 | |
| GSE74703 | VPS13A-AS1 | 100286938 | 5 | 4 | 27 | |
| GSE74704 | VPS13A-AS1 | 100286938 | 3 | 7 | 10 |
Total number of gains: 41; Total number of losses: 82; Total Number of normals: 269.
Somatic mutations of VPS13A-AS1:
Generating mutation plots.
Highly correlated genes for VPS13A-AS1:
Showing top 20/124 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| VPS13A-AS1 | SLC5A11 | 0.65705 | 3 | 0 | 3 |
| VPS13A-AS1 | SRD5A3-AS1 | 0.655098 | 3 | 0 | 3 |
| VPS13A-AS1 | MUC8 | 0.636697 | 3 | 0 | 3 |
| VPS13A-AS1 | GBX2 | 0.631395 | 3 | 0 | 3 |
| VPS13A-AS1 | MYPN | 0.630844 | 3 | 0 | 3 |
| VPS13A-AS1 | GPR17 | 0.630802 | 3 | 0 | 3 |
| VPS13A-AS1 | LINC00334 | 0.612403 | 4 | 0 | 4 |
| VPS13A-AS1 | SHISA7 | 0.611514 | 3 | 0 | 3 |
| VPS13A-AS1 | DLGAP2-AS1 | 0.609885 | 4 | 0 | 3 |
| VPS13A-AS1 | KCNA4 | 0.60531 | 3 | 0 | 3 |
| VPS13A-AS1 | MAP1LC3B2 | 0.603642 | 4 | 0 | 3 |
| VPS13A-AS1 | C2orf73 | 0.601312 | 4 | 0 | 3 |
| VPS13A-AS1 | FNDC9 | 0.601311 | 4 | 0 | 4 |
| VPS13A-AS1 | NEUROG3 | 0.59991 | 5 | 0 | 3 |
| VPS13A-AS1 | KCNIP2-AS1 | 0.598498 | 4 | 0 | 3 |
| VPS13A-AS1 | NANOS3 | 0.597525 | 4 | 0 | 3 |
| VPS13A-AS1 | ZFR2 | 0.597473 | 4 | 0 | 4 |
| VPS13A-AS1 | TPBGL | 0.596634 | 4 | 0 | 3 |
| VPS13A-AS1 | HOXB1 | 0.592612 | 3 | 0 | 3 |
| VPS13A-AS1 | JOSD2 | 0.592039 | 4 | 0 | 4 |
For details and further investigation, click here
