| Full name: vertebrae development associated | Alias Symbol: FLJ10811|vertnin | ||
| Type: protein-coding gene | Cytoband: 14q24.3 | ||
| Entrez ID: 55237 | HGNC ID: HGNC:20223 | Ensembl Gene: ENSG00000133980 | OMIM ID: |
Expression of VRTN:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | VRTN | 55237 | 220536_at | -0.0016 | 0.9966 | |
| GSE20347 | VRTN | 55237 | 220536_at | -0.1443 | 0.0417 | |
| GSE23400 | VRTN | 55237 | 220536_at | -0.1554 | 0.0001 | |
| GSE26886 | VRTN | 55237 | 220536_at | 0.0256 | 0.8919 | |
| GSE29001 | VRTN | 55237 | 220536_at | -0.2830 | 0.0275 | |
| GSE38129 | VRTN | 55237 | 220536_at | -0.2306 | 0.0217 | |
| GSE45670 | VRTN | 55237 | 220536_at | -0.1264 | 0.1814 | |
| GSE53622 | VRTN | 55237 | 137051 | -0.1212 | 0.0279 | |
| GSE53624 | VRTN | 55237 | 137051 | -0.2072 | 0.0829 | |
| GSE63941 | VRTN | 55237 | 220536_at | 0.0473 | 0.8171 | |
| GSE77861 | VRTN | 55237 | 220536_at | -0.1623 | 0.3553 | |
| GSE97050 | VRTN | 55237 | A_23_P140362 | -0.0761 | 0.7400 | |
| SRP133303 | VRTN | 55237 | RNAseq | 0.1737 | 0.3845 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by VRTN expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of VRTN:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | VRTN | 55237 | 8 | 3 | 19 | |
| GSE20123 | VRTN | 55237 | 8 | 3 | 19 | |
| GSE43470 | VRTN | 55237 | 8 | 3 | 32 | |
| GSE46452 | VRTN | 55237 | 16 | 3 | 40 | |
| GSE47630 | VRTN | 55237 | 11 | 8 | 21 | |
| GSE54993 | VRTN | 55237 | 3 | 8 | 59 | |
| GSE54994 | VRTN | 55237 | 19 | 4 | 30 | |
| GSE60625 | VRTN | 55237 | 0 | 2 | 9 | |
| GSE74703 | VRTN | 55237 | 7 | 3 | 26 | |
| GSE74704 | VRTN | 55237 | 3 | 3 | 14 | |
| TCGA | VRTN | 55237 | 32 | 16 | 48 |
Total number of gains: 115; Total number of losses: 56; Total Number of normals: 317.
Somatic mutations of VRTN:
Generating mutation plots.
Highly correlated genes for VRTN:
Showing top 20/808 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| VRTN | ZCCHC18 | 0.831914 | 4 | 0 | 4 |
| VRTN | OR2Y1 | 0.790243 | 3 | 0 | 3 |
| VRTN | ISLR2 | 0.76223 | 6 | 0 | 6 |
| VRTN | LRTM2 | 0.737586 | 3 | 0 | 3 |
| VRTN | SPACA3 | 0.731607 | 4 | 0 | 4 |
| VRTN | JAKMIP1 | 0.727529 | 3 | 0 | 3 |
| VRTN | PPP1R3F | 0.722519 | 3 | 0 | 3 |
| VRTN | KIF19 | 0.720141 | 4 | 0 | 4 |
| VRTN | RAD52 | 0.712013 | 3 | 0 | 3 |
| VRTN | TM6SF2 | 0.711268 | 5 | 0 | 5 |
| VRTN | CABP4 | 0.710975 | 3 | 0 | 3 |
| VRTN | CCDC28B | 0.708115 | 3 | 0 | 3 |
| VRTN | ATAD3C | 0.706493 | 4 | 0 | 3 |
| VRTN | TEX13A | 0.704421 | 4 | 0 | 4 |
| VRTN | TMEM239 | 0.701058 | 3 | 0 | 3 |
| VRTN | ZNF219 | 0.700544 | 4 | 0 | 4 |
| VRTN | PRRG3 | 0.69933 | 4 | 0 | 3 |
| VRTN | UROC1 | 0.697777 | 3 | 0 | 3 |
| VRTN | DUSP15 | 0.696176 | 5 | 0 | 5 |
| VRTN | SP6 | 0.69444 | 4 | 0 | 3 |
For details and further investigation, click here
