COLEC12

 

Full name: collectin subfamily member 12 Alias Symbol: SRCL|CL-P1|SCARA4
Type: protein-coding gene Cytoband: 18p11.32
Entrez ID: 81035 HGNC ID: HGNC:16016 Ensembl Gene: ENSG00000158270 OMIM ID: 607621
Drug and gene relationship at DGIdb

 

Expression of COLEC12:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 COLEC12 81035 221019_s_at -1.1327 0.3770
GSE20347 COLEC12 81035 221019_s_at 0.1256 0.7630
GSE23400 COLEC12 81035 221019_s_at -0.0663 0.6983
GSE26886 COLEC12 81035 221019_s_at 0.7017 0.1187
GSE29001 COLEC12 81035 221019_s_at 0.3880 0.4236
GSE38129 COLEC12 81035 221019_s_at -0.2035 0.6646
GSE45670 COLEC12 81035 221019_s_at -2.0589 0.0000
GSE53622 COLEC12 81035 17758 -0.3746 0.1004
GSE53624 COLEC12 81035 17758 -0.0508 0.8279
GSE63941 COLEC12 81035 221019_s_at -3.5699 0.0000
GSE77861 COLEC12 81035 221019_s_at 0.0650 0.7270
GSE97050 COLEC12 81035 A_23_P27306 -0.0408 0.9463
SRP007169 COLEC12 81035 RNAseq 1.7021 0.0002
SRP008496 COLEC12 81035 RNAseq 2.4984 0.0000
SRP064894 COLEC12 81035 RNAseq 0.8199 0.0262
SRP133303 COLEC12 81035 RNAseq 0.1088 0.7645
SRP159526 COLEC12 81035 RNAseq 0.1494 0.7294
SRP193095 COLEC12 81035 RNAseq 0.3817 0.0746
SRP219564 COLEC12 81035 RNAseq 0.4032 0.7344
TCGA COLEC12 81035 RNAseq -0.3564 0.0785

Upregulated datasets: 2; Downregulated datasets: 2.  

 

Survival by COLEC12 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of COLEC12:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 COLEC12 81035 6 4 20
GSE20123 COLEC12 81035 6 4 20
GSE43470 COLEC12 81035 2 5 36
GSE46452 COLEC12 81035 4 20 35
GSE47630 COLEC12 81035 7 18 15
GSE54993 COLEC12 81035 6 3 61
GSE54994 COLEC12 81035 12 8 33
GSE60625 COLEC12 81035 0 4 7
GSE74703 COLEC12 81035 2 2 32
GSE74704 COLEC12 81035 4 2 14
TCGA COLEC12 81035 35 18 43

Total number of gains: 84; Total number of losses: 88; Total Number of normals: 316.  

 

Somatic mutations of COLEC12:

 

Generating mutation plots.

 

Highly correlated genes for COLEC12:

 

Showing top 20/1174 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
COLEC12FIBIN0.859916404
COLEC12ZNF1320.79635303
COLEC12MGARP0.784887303
COLEC12PMP220.77370612012
COLEC12ZNF5830.767856303
COLEC12MRGPRF0.767206707
COLEC12ZNF3470.756087303
COLEC12RUNX1T10.752172706
COLEC12HGF0.751827404
COLEC12PABPC50.751373606
COLEC12BICC10.7466671009
COLEC12MAGI2-AS30.745876606
COLEC12TCEAL70.745705606
COLEC12MYOCD0.744472504
COLEC12FILIP1L0.74309412012
COLEC12OLFML30.74114912010
COLEC12FBN10.74046911011
COLEC12VGLL30.73904111011
COLEC12KCTD120.738699909
COLEC12DCN0.7386491109

For details and further investigation, click here