| Full name: piggyBac transposable element derived 1 | Alias Symbol: HUCEP-4|dJ874C20.4|SCAND4 | ||
| Type: protein-coding gene | Cytoband: 6p22.1 | ||
| Entrez ID: 84547 | HGNC ID: HGNC:19398 | Ensembl Gene: ENSG00000137338 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of PGBD1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | PGBD1 | 84547 | 235411_at | -0.2101 | 0.7286 | |
| GSE26886 | PGBD1 | 84547 | 235411_at | 0.1312 | 0.6482 | |
| GSE45670 | PGBD1 | 84547 | 235411_at | -0.3791 | 0.1636 | |
| GSE53622 | PGBD1 | 84547 | 89409 | -0.1299 | 0.4555 | |
| GSE53624 | PGBD1 | 84547 | 89409 | -0.2395 | 0.0597 | |
| GSE63941 | PGBD1 | 84547 | 235411_at | -1.3143 | 0.0788 | |
| GSE77861 | PGBD1 | 84547 | 235411_at | 0.0300 | 0.8394 | |
| GSE97050 | PGBD1 | 84547 | A_23_P156632 | 0.1198 | 0.6480 | |
| SRP064894 | PGBD1 | 84547 | RNAseq | 0.5606 | 0.0158 | |
| SRP133303 | PGBD1 | 84547 | RNAseq | -0.1904 | 0.4394 | |
| SRP159526 | PGBD1 | 84547 | RNAseq | 0.3365 | 0.4643 | |
| SRP193095 | PGBD1 | 84547 | RNAseq | -0.0458 | 0.8292 | |
| SRP219564 | PGBD1 | 84547 | RNAseq | 0.1288 | 0.7024 | |
| TCGA | PGBD1 | 84547 | RNAseq | -0.1743 | 0.1400 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by PGBD1 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of PGBD1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | PGBD1 | 84547 | 3 | 2 | 25 | |
| GSE20123 | PGBD1 | 84547 | 3 | 2 | 25 | |
| GSE43470 | PGBD1 | 84547 | 5 | 0 | 38 | |
| GSE46452 | PGBD1 | 84547 | 1 | 10 | 48 | |
| GSE47630 | PGBD1 | 84547 | 7 | 4 | 29 | |
| GSE54993 | PGBD1 | 84547 | 2 | 1 | 67 | |
| GSE54994 | PGBD1 | 84547 | 11 | 4 | 38 | |
| GSE60625 | PGBD1 | 84547 | 0 | 1 | 10 | |
| GSE74703 | PGBD1 | 84547 | 5 | 0 | 31 | |
| GSE74704 | PGBD1 | 84547 | 0 | 1 | 19 | |
| TCGA | PGBD1 | 84547 | 15 | 19 | 62 |
Total number of gains: 52; Total number of losses: 44; Total Number of normals: 392.
Somatic mutations of PGBD1:
Generating mutation plots.
Highly correlated genes for PGBD1:
Showing top 20/31 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| PGBD1 | SLC19A2 | 0.683158 | 3 | 0 | 3 |
| PGBD1 | QDPR | 0.670362 | 3 | 0 | 3 |
| PGBD1 | ZNF432 | 0.639796 | 3 | 0 | 3 |
| PGBD1 | MTCH1 | 0.638809 | 3 | 0 | 3 |
| PGBD1 | HOXB3 | 0.606104 | 4 | 0 | 3 |
| PGBD1 | UBE2Q2L | 0.601004 | 3 | 0 | 3 |
| PGBD1 | IFT46 | 0.58908 | 4 | 0 | 3 |
| PGBD1 | TMEM98 | 0.583886 | 5 | 0 | 4 |
| PGBD1 | MTCP1 | 0.582591 | 3 | 0 | 3 |
| PGBD1 | TOMM40L | 0.579815 | 4 | 0 | 3 |
| PGBD1 | ZNF573 | 0.577629 | 4 | 0 | 3 |
| PGBD1 | ALG9 | 0.576108 | 4 | 0 | 4 |
| PGBD1 | ZNF529 | 0.575003 | 6 | 0 | 4 |
| PGBD1 | CAND2 | 0.57095 | 5 | 0 | 3 |
| PGBD1 | ZC3H13 | 0.569024 | 5 | 0 | 3 |
| PGBD1 | VPS45 | 0.566604 | 4 | 0 | 3 |
| PGBD1 | ZNF585A | 0.561692 | 3 | 0 | 3 |
| PGBD1 | SESTD1 | 0.560543 | 4 | 0 | 3 |
| PGBD1 | ZBED6 | 0.557247 | 3 | 0 | 3 |
| PGBD1 | ZNF45 | 0.540664 | 7 | 0 | 5 |
For details and further investigation, click here
