| Full name: sarcoglycan delta | Alias Symbol: DAGD|LGMD2F|CMD1L | ||
| Type: protein-coding gene | Cytoband: 5q33.2-q33.3 | ||
| Entrez ID: 6444 | HGNC ID: HGNC:10807 | Ensembl Gene: ENSG00000170624 | OMIM ID: 601411 |
| Drug and gene relationship at DGIdb | |||
Expression of SGCD:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SGCD | 6444 | 213543_at | -1.1767 | 0.3359 | |
| GSE20347 | SGCD | 6444 | 214492_at | 0.0466 | 0.4916 | |
| GSE23400 | SGCD | 6444 | 214492_at | -0.0888 | 0.0227 | |
| GSE26886 | SGCD | 6444 | 210329_s_at | 0.2525 | 0.0898 | |
| GSE29001 | SGCD | 6444 | 213543_at | -0.3208 | 0.1233 | |
| GSE38129 | SGCD | 6444 | 213543_at | -0.4639 | 0.3349 | |
| GSE45670 | SGCD | 6444 | 213543_at | -2.0888 | 0.0000 | |
| GSE53622 | SGCD | 6444 | 22035 | -0.4926 | 0.0086 | |
| GSE53624 | SGCD | 6444 | 22035 | -0.4451 | 0.0020 | |
| GSE63941 | SGCD | 6444 | 214492_at | -2.8560 | 0.0000 | |
| GSE77861 | SGCD | 6444 | 210329_s_at | -0.0130 | 0.9180 | |
| GSE97050 | SGCD | 6444 | A_33_P3267375 | -0.9155 | 0.1873 | |
| SRP007169 | SGCD | 6444 | RNAseq | 3.7791 | 0.0000 | |
| SRP008496 | SGCD | 6444 | RNAseq | 6.7495 | 0.0000 | |
| SRP064894 | SGCD | 6444 | RNAseq | 0.2293 | 0.5534 | |
| SRP133303 | SGCD | 6444 | RNAseq | 0.5312 | 0.1767 | |
| SRP159526 | SGCD | 6444 | RNAseq | 0.2201 | 0.6673 | |
| SRP193095 | SGCD | 6444 | RNAseq | 1.3452 | 0.0037 | |
| SRP219564 | SGCD | 6444 | RNAseq | -0.1958 | 0.8459 | |
| TCGA | SGCD | 6444 | RNAseq | -0.5988 | 0.0026 |
Upregulated datasets: 3; Downregulated datasets: 2.
Survival by SGCD expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of SGCD:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SGCD | 6444 | 0 | 11 | 19 | |
| GSE20123 | SGCD | 6444 | 0 | 11 | 19 | |
| GSE43470 | SGCD | 6444 | 2 | 10 | 31 | |
| GSE46452 | SGCD | 6444 | 0 | 27 | 32 | |
| GSE47630 | SGCD | 6444 | 0 | 20 | 20 | |
| GSE54993 | SGCD | 6444 | 9 | 1 | 60 | |
| GSE54994 | SGCD | 6444 | 2 | 15 | 36 | |
| GSE60625 | SGCD | 6444 | 0 | 0 | 11 | |
| GSE74703 | SGCD | 6444 | 2 | 8 | 26 | |
| GSE74704 | SGCD | 6444 | 0 | 6 | 14 | |
| TCGA | SGCD | 6444 | 4 | 37 | 55 |
Total number of gains: 19; Total number of losses: 146; Total Number of normals: 323.
Somatic mutations of SGCD:
Generating mutation plots.
Highly correlated genes for SGCD:
Showing top 20/1005 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SGCD | MRGPRF | 0.846376 | 7 | 0 | 7 |
| SGCD | NEGR1 | 0.836544 | 6 | 0 | 6 |
| SGCD | LINC01279 | 0.830516 | 3 | 0 | 3 |
| SGCD | DNM3OS | 0.804097 | 3 | 0 | 3 |
| SGCD | TBX5-AS1 | 0.80403 | 5 | 0 | 5 |
| SGCD | ZEB1 | 0.8007 | 3 | 0 | 3 |
| SGCD | CYS1 | 0.798322 | 6 | 0 | 6 |
| SGCD | SMIM10 | 0.795932 | 5 | 0 | 5 |
| SGCD | STARD9 | 0.795564 | 5 | 0 | 5 |
| SGCD | AGTR1 | 0.788889 | 8 | 0 | 7 |
| SGCD | DDR2 | 0.78691 | 9 | 0 | 8 |
| SGCD | UBXN10 | 0.786769 | 3 | 0 | 3 |
| SGCD | RHOJ | 0.78484 | 4 | 0 | 4 |
| SGCD | SLC16A4 | 0.783906 | 7 | 0 | 7 |
| SGCD | TCEAL7 | 0.776036 | 6 | 0 | 5 |
| SGCD | ZNF347 | 0.775691 | 3 | 0 | 3 |
| SGCD | CYP2U1 | 0.773329 | 6 | 0 | 6 |
| SGCD | NAP1L3 | 0.773313 | 7 | 0 | 6 |
| SGCD | PGM5-AS1 | 0.772627 | 3 | 0 | 3 |
| SGCD | MSRB3 | 0.771414 | 8 | 0 | 7 |
For details and further investigation, click here
