| Full name: PGM5 antisense RNA 1 | Alias Symbol: FAM233A|LOC572558 | ||
| Type: non-coding RNA | Cytoband: 9q21.11 | ||
| Entrez ID: 572558 | HGNC ID: HGNC:44181 | Ensembl Gene: ENSG00000224958 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of PGM5-AS1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | PGM5-AS1 | 572558 | 230595_at | -2.8022 | 0.0336 | |
| GSE26886 | PGM5-AS1 | 572558 | 230595_at | -0.4530 | 0.2203 | |
| GSE63941 | PGM5-AS1 | 572558 | 230595_at | -3.2730 | 0.0000 | |
| GSE77861 | PGM5-AS1 | 572558 | 230595_at | -0.1219 | 0.4148 | |
| SRP064894 | PGM5-AS1 | 572558 | RNAseq | -2.6692 | 0.0000 | |
| SRP133303 | PGM5-AS1 | 572558 | RNAseq | -3.5661 | 0.0046 | |
| SRP159526 | PGM5-AS1 | 572558 | RNAseq | -4.1230 | 0.0000 | |
| SRP219564 | PGM5-AS1 | 572558 | RNAseq | -2.6990 | 0.0615 |
Upregulated datasets: 0; Downregulated datasets: 5.
Copy number change of PGM5-AS1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | PGM5-AS1 | 572558 | 6 | 10 | 14 | |
| GSE20123 | PGM5-AS1 | 572558 | 6 | 11 | 13 | |
| GSE43470 | PGM5-AS1 | 572558 | 6 | 5 | 32 | |
| GSE46452 | PGM5-AS1 | 572558 | 6 | 15 | 38 | |
| GSE47630 | PGM5-AS1 | 572558 | 1 | 19 | 20 | |
| GSE54993 | PGM5-AS1 | 572558 | 5 | 1 | 64 | |
| GSE54994 | PGM5-AS1 | 572558 | 4 | 13 | 36 | |
| GSE60625 | PGM5-AS1 | 572558 | 0 | 0 | 11 | |
| GSE74703 | PGM5-AS1 | 572558 | 5 | 4 | 27 | |
| GSE74704 | PGM5-AS1 | 572558 | 2 | 7 | 11 |
Total number of gains: 41; Total number of losses: 85; Total Number of normals: 266.
Somatic mutations of PGM5-AS1:
Generating mutation plots.
Highly correlated genes for PGM5-AS1:
Showing top 20/81 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| PGM5-AS1 | FGF7 | 0.891384 | 3 | 0 | 3 |
| PGM5-AS1 | TMEM100 | 0.886639 | 3 | 0 | 3 |
| PGM5-AS1 | F10 | 0.874328 | 3 | 0 | 3 |
| PGM5-AS1 | NEGR1 | 0.873506 | 3 | 0 | 3 |
| PGM5-AS1 | GSTM5 | 0.848833 | 3 | 0 | 3 |
| PGM5-AS1 | CNTN4 | 0.847055 | 3 | 0 | 3 |
| PGM5-AS1 | LINC01082 | 0.839759 | 3 | 0 | 3 |
| PGM5-AS1 | BHMT2 | 0.829713 | 3 | 0 | 3 |
| PGM5-AS1 | LINC01140 | 0.828641 | 3 | 0 | 3 |
| PGM5-AS1 | SCN7A | 0.828402 | 3 | 0 | 3 |
| PGM5-AS1 | LMOD1 | 0.816438 | 3 | 0 | 3 |
| PGM5-AS1 | MFAP4 | 0.812431 | 3 | 0 | 3 |
| PGM5-AS1 | TCF21 | 0.803878 | 3 | 0 | 3 |
| PGM5-AS1 | ZEB2 | 0.801646 | 3 | 0 | 3 |
| PGM5-AS1 | GFRA1 | 0.798028 | 3 | 0 | 3 |
| PGM5-AS1 | CXCL12 | 0.781316 | 3 | 0 | 3 |
| PGM5-AS1 | GREM2 | 0.776513 | 4 | 0 | 3 |
| PGM5-AS1 | FAM13C | 0.774721 | 3 | 0 | 3 |
| PGM5-AS1 | SGCD | 0.772627 | 3 | 0 | 3 |
| PGM5-AS1 | ZNF536 | 0.768713 | 4 | 0 | 4 |
For details and further investigation, click here
