| Full name: SNRK antisense RNA 1 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 3p22.1 | ||
| Entrez ID: 100873954 | HGNC ID: HGNC:41269 | Ensembl Gene: ENSG00000234617 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of SNRK-AS1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SNRK-AS1 | 100873954 | 237942_at | -0.3325 | 0.4636 | |
| GSE26886 | SNRK-AS1 | 100873954 | 237942_at | 0.0403 | 0.7498 | |
| GSE45670 | SNRK-AS1 | 100873954 | 237942_at | -0.3188 | 0.0412 | |
| GSE63941 | SNRK-AS1 | 100873954 | 237942_at | -0.5808 | 0.1910 | |
| GSE77861 | SNRK-AS1 | 100873954 | 237942_at | -0.0415 | 0.7002 | |
| SRP064894 | SNRK-AS1 | 100873954 | RNAseq | -0.6270 | 0.0477 | |
| SRP133303 | SNRK-AS1 | 100873954 | RNAseq | -0.9518 | 0.0002 | |
| SRP159526 | SNRK-AS1 | 100873954 | RNAseq | -0.8776 | 0.1121 | |
| SRP193095 | SNRK-AS1 | 100873954 | RNAseq | -0.4113 | 0.0255 | |
| SRP219564 | SNRK-AS1 | 100873954 | RNAseq | -1.0591 | 0.0750 |
Upregulated datasets: 0; Downregulated datasets: 0.
Copy number change of SNRK-AS1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SNRK-AS1 | 100873954 | 0 | 19 | 11 | |
| GSE20123 | SNRK-AS1 | 100873954 | 0 | 19 | 11 | |
| GSE43470 | SNRK-AS1 | 100873954 | 0 | 21 | 22 | |
| GSE46452 | SNRK-AS1 | 100873954 | 2 | 17 | 40 | |
| GSE47630 | SNRK-AS1 | 100873954 | 1 | 24 | 15 | |
| GSE54993 | SNRK-AS1 | 100873954 | 7 | 2 | 61 | |
| GSE54994 | SNRK-AS1 | 100873954 | 1 | 34 | 18 | |
| GSE60625 | SNRK-AS1 | 100873954 | 5 | 0 | 6 | |
| GSE74703 | SNRK-AS1 | 100873954 | 0 | 16 | 20 | |
| GSE74704 | SNRK-AS1 | 100873954 | 0 | 13 | 7 |
Total number of gains: 16; Total number of losses: 165; Total Number of normals: 211.
Somatic mutations of SNRK-AS1:
Generating mutation plots.
Highly correlated genes for SNRK-AS1:
Showing all 15 correlated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SNRK-AS1 | PRKAA2 | 0.668297 | 3 | 0 | 3 |
| SNRK-AS1 | KAT6B | 0.64081 | 3 | 0 | 3 |
| SNRK-AS1 | CHPT1 | 0.623594 | 3 | 0 | 3 |
| SNRK-AS1 | PTCHD1 | 0.620986 | 3 | 0 | 3 |
| SNRK-AS1 | RCOR3 | 0.619347 | 3 | 0 | 3 |
| SNRK-AS1 | ZMAT1 | 0.614971 | 3 | 0 | 3 |
| SNRK-AS1 | GSN | 0.601738 | 3 | 0 | 3 |
| SNRK-AS1 | TMEM178A | 0.593688 | 3 | 0 | 3 |
| SNRK-AS1 | CACNA2D1 | 0.582062 | 3 | 0 | 3 |
| SNRK-AS1 | RNF103 | 0.572505 | 3 | 0 | 3 |
| SNRK-AS1 | FRAS1 | 0.568221 | 3 | 0 | 3 |
| SNRK-AS1 | PTCH1 | 0.560778 | 3 | 0 | 3 |
| SNRK-AS1 | ZMYND11 | 0.544879 | 5 | 0 | 3 |
| SNRK-AS1 | RDH5 | 0.530883 | 4 | 0 | 3 |
| SNRK-AS1 | ZNF248 | 0.507866 | 5 | 0 | 4 |
For details and further investigation, click here
