| Full name: vanin 3 | Alias Symbol: HSA238982 | ||
| Type: protein-coding gene | Cytoband: 6q23.2 | ||
| Entrez ID: 55350 | HGNC ID: HGNC:16431 | Ensembl Gene: ENSG00000093134 | OMIM ID: 606592 |
| Drug and gene relationship at DGIdb | |||
Expression of VNN3:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | VNN3 | 55350 | 220528_at | 0.5970 | 0.6013 | |
| GSE20347 | VNN3 | 55350 | 220528_at | 0.1866 | 0.3122 | |
| GSE23400 | VNN3 | 55350 | 220528_at | -0.0722 | 0.1272 | |
| GSE26886 | VNN3 | 55350 | 220528_at | 0.2494 | 0.3724 | |
| GSE29001 | VNN3 | 55350 | 220528_at | 0.2008 | 0.4692 | |
| GSE38129 | VNN3 | 55350 | 220528_at | 0.0233 | 0.9041 | |
| GSE45670 | VNN3 | 55350 | 220528_at | 1.3084 | 0.0006 | |
| GSE53622 | VNN3 | 55350 | 109682 | -0.9754 | 0.0000 | |
| GSE53624 | VNN3 | 55350 | 109682 | -0.3897 | 0.0000 | |
| GSE63941 | VNN3 | 55350 | 220528_at | 0.0448 | 0.9524 | |
| GSE77861 | VNN3 | 55350 | 220528_at | -0.0056 | 0.9545 | |
| SRP193095 | VNN3 | 55350 | RNAseq | 2.7279 | 0.0000 | |
| TCGA | VNN3 | 55350 | RNAseq | 1.7074 | 0.0030 |
Upregulated datasets: 3; Downregulated datasets: 0.
Survival by VNN3 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of VNN3:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | VNN3 | 55350 | 3 | 4 | 23 | |
| GSE20123 | VNN3 | 55350 | 3 | 3 | 24 | |
| GSE43470 | VNN3 | 55350 | 5 | 0 | 38 | |
| GSE46452 | VNN3 | 55350 | 2 | 11 | 46 | |
| GSE47630 | VNN3 | 55350 | 9 | 4 | 27 | |
| GSE54993 | VNN3 | 55350 | 3 | 2 | 65 | |
| GSE54994 | VNN3 | 55350 | 9 | 7 | 37 | |
| GSE60625 | VNN3 | 55350 | 0 | 1 | 10 | |
| GSE74703 | VNN3 | 55350 | 4 | 0 | 32 | |
| GSE74704 | VNN3 | 55350 | 1 | 1 | 18 | |
| TCGA | VNN3 | 55350 | 11 | 18 | 67 |
Total number of gains: 50; Total number of losses: 51; Total Number of normals: 387.
Somatic mutations of VNN3:
Generating mutation plots.
Highly correlated genes for VNN3:
Showing top 20/119 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| VNN3 | TMEM200C | 0.759138 | 3 | 0 | 3 |
| VNN3 | SLC22A31 | 0.750564 | 3 | 0 | 3 |
| VNN3 | PCED1B-AS1 | 0.711243 | 3 | 0 | 3 |
| VNN3 | C14orf180 | 0.710517 | 3 | 0 | 3 |
| VNN3 | TNNC1 | 0.702258 | 3 | 0 | 3 |
| VNN3 | GBP5 | 0.695439 | 3 | 0 | 3 |
| VNN3 | MIRLET7BHG | 0.656685 | 3 | 0 | 3 |
| VNN3 | FAM222A-AS1 | 0.655056 | 3 | 0 | 3 |
| VNN3 | ZNF721 | 0.652848 | 4 | 0 | 4 |
| VNN3 | MROH2A | 0.648942 | 3 | 0 | 3 |
| VNN3 | TGFA | 0.642248 | 3 | 0 | 3 |
| VNN3 | ZNF160 | 0.641932 | 4 | 0 | 4 |
| VNN3 | SPACA3 | 0.637234 | 5 | 0 | 4 |
| VNN3 | CD7 | 0.630558 | 5 | 0 | 5 |
| VNN3 | TSR1 | 0.627994 | 3 | 0 | 3 |
| VNN3 | LMLN | 0.627062 | 3 | 0 | 3 |
| VNN3 | HK3 | 0.62476 | 4 | 0 | 3 |
| VNN3 | IFFO1 | 0.622658 | 4 | 0 | 3 |
| VNN3 | IL17RE | 0.622365 | 3 | 0 | 3 |
| VNN3 | ZNF611 | 0.619215 | 3 | 0 | 3 |
For details and further investigation, click here
