| Full name: calcium responsive transcription factor | Alias Symbol: FLJ21579|CaRF|NYD-SP24 | ||
| Type: protein-coding gene | Cytoband: 2q33.2 | ||
| Entrez ID: 79800 | HGNC ID: HGNC:14435 | Ensembl Gene: ENSG00000138380 | OMIM ID: 607586 |
Expression of CARF:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | CARF | 79800 | 219834_at | -0.7323 | 0.0599 | |
| GSE20347 | CARF | 79800 | 219834_at | -0.1682 | 0.1887 | |
| GSE23400 | CARF | 79800 | 219834_at | -0.0121 | 0.6516 | |
| GSE26886 | CARF | 79800 | 219834_at | 0.3783 | 0.1447 | |
| GSE29001 | CARF | 79800 | 219834_at | -0.1634 | 0.6349 | |
| GSE38129 | CARF | 79800 | 219834_at | -0.2075 | 0.0426 | |
| GSE45670 | CARF | 79800 | 219834_at | -0.4612 | 0.0364 | |
| GSE53622 | CARF | 79800 | 142559 | -0.3489 | 0.0028 | |
| GSE53624 | CARF | 79800 | 142559 | -0.5958 | 0.0000 | |
| GSE63941 | CARF | 79800 | 219834_at | -0.5655 | 0.3359 | |
| GSE77861 | CARF | 79800 | 1555391_a_at | -0.1150 | 0.3326 | |
| SRP007169 | CARF | 79800 | RNAseq | -0.5201 | 0.2304 | |
| SRP008496 | CARF | 79800 | RNAseq | 0.1372 | 0.6461 | |
| SRP064894 | CARF | 79800 | RNAseq | -0.7013 | 0.0189 | |
| SRP133303 | CARF | 79800 | RNAseq | -0.3654 | 0.1222 | |
| SRP159526 | CARF | 79800 | RNAseq | -0.6529 | 0.1125 | |
| SRP193095 | CARF | 79800 | RNAseq | -0.4411 | 0.0010 | |
| SRP219564 | CARF | 79800 | RNAseq | -0.2869 | 0.5840 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by CARF expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of CARF:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | CARF | 79800 | 7 | 4 | 19 | |
| GSE20123 | CARF | 79800 | 7 | 4 | 19 | |
| GSE43470 | CARF | 79800 | 2 | 3 | 38 | |
| GSE46452 | CARF | 79800 | 1 | 4 | 54 | |
| GSE47630 | CARF | 79800 | 4 | 5 | 31 | |
| GSE54993 | CARF | 79800 | 0 | 3 | 67 | |
| GSE54994 | CARF | 79800 | 10 | 9 | 34 | |
| GSE60625 | CARF | 79800 | 0 | 3 | 8 | |
| GSE74703 | CARF | 79800 | 2 | 2 | 32 | |
| GSE74704 | CARF | 79800 | 3 | 2 | 15 | |
| TCGA | CARF | 79800 | 20 | 13 | 63 |
Total number of gains: 56; Total number of losses: 52; Total Number of normals: 380.
Somatic mutations of CARF:
Generating mutation plots.
Highly correlated genes for CARF:
Showing top 20/98 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| CARF | EEF1A1 | 0.675845 | 3 | 0 | 3 |
| CARF | CDC37L1 | 0.660202 | 3 | 0 | 3 |
| CARF | RSRC2 | 0.654999 | 3 | 0 | 3 |
| CARF | ELF2 | 0.64231 | 3 | 0 | 3 |
| CARF | ZMYND11 | 0.634079 | 4 | 0 | 4 |
| CARF | CDC73 | 0.633567 | 3 | 0 | 3 |
| CARF | DHRS12 | 0.63042 | 4 | 0 | 4 |
| CARF | GSN | 0.616447 | 4 | 0 | 3 |
| CARF | MICU3 | 0.612375 | 4 | 0 | 4 |
| CARF | ZFP2 | 0.601405 | 3 | 0 | 3 |
| CARF | MED7 | 0.595499 | 4 | 0 | 3 |
| CARF | EPC1 | 0.595464 | 5 | 0 | 4 |
| CARF | SRR | 0.590837 | 3 | 0 | 3 |
| CARF | PPP1CB | 0.586084 | 4 | 0 | 3 |
| CARF | ZNF33A | 0.581817 | 5 | 0 | 4 |
| CARF | ZC3H6 | 0.580279 | 5 | 0 | 4 |
| CARF | ZNF33B | 0.579869 | 8 | 0 | 5 |
| CARF | ALDH6A1 | 0.575372 | 8 | 0 | 4 |
| CARF | SETMAR | 0.574366 | 5 | 0 | 3 |
| CARF | AKAP11 | 0.573833 | 7 | 0 | 5 |
For details and further investigation, click here
