CEBPA

 

Full name: CCAAT enhancer binding protein alpha Alias Symbol: C/EBP-alpha
Type: protein-coding gene Cytoband: 19q13.11
Entrez ID: 1050 HGNC ID: HGNC:1833 Ensembl Gene: ENSG00000245848 OMIM ID: 116897
Drug and gene relationship at DGIdb
Screen Evidence:
  • Knocking out of this gene by CRIPR/Cas9 screen found 3/325 cell lines had fitness change in Project Score.
  • This gene has been idenfitied as a common driver in this paper.
  • Knocking out of this gene by CRIPR/Cas9 screen found altered tolerance on DNA toxicity in Genotoxic Screens.

 

CEBPA involved pathways:

KEGG pathway Description View
hsa04932Non-alcoholic fatty liver disease (NAFLD)
hsa05200Pathways in cancer
hsa05221Acute myeloid leukemia

 

Expression of CEBPA:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 CEBPA 1050 204039_at 0.8282 0.1858
GSE20347 CEBPA 1050 204039_at 0.1576 0.4350
GSE23400 CEBPA 1050 204039_at 0.2692 0.0143
GSE26886 CEBPA 1050 204039_at -0.4291 0.0450
GSE29001 CEBPA 1050 204039_at 0.2915 0.3828
GSE38129 CEBPA 1050 204039_at 0.2544 0.2774
GSE45670 CEBPA 1050 204039_at 0.5588 0.0244
GSE53622 CEBPA 1050 233 0.1079 0.2600
GSE53624 CEBPA 1050 233 0.3286 0.0001
GSE63941 CEBPA 1050 204039_at 1.8809 0.0089
GSE77861 CEBPA 1050 204039_at 0.2713 0.4851
GSE97050 CEBPA 1050 A_24_P224727 0.7437 0.3284
SRP007169 CEBPA 1050 RNAseq -0.4738 0.2361
SRP008496 CEBPA 1050 RNAseq -0.4297 0.2226
SRP064894 CEBPA 1050 RNAseq 0.1712 0.6020
SRP133303 CEBPA 1050 RNAseq 0.1076 0.7687
SRP159526 CEBPA 1050 RNAseq 0.8487 0.0077
SRP193095 CEBPA 1050 RNAseq -0.2225 0.3089
SRP219564 CEBPA 1050 RNAseq -0.5156 0.3347
TCGA CEBPA 1050 RNAseq 0.2269 0.0413

Upregulated datasets: 1; Downregulated datasets: 0.  


 

Survival by CEBPA expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  


Copy number change of CEBPA:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 CEBPA 1050 7 6 17
GSE20123 CEBPA 1050 7 5 18
GSE43470 CEBPA 1050 4 6 33
GSE46452 CEBPA 1050 47 1 11
GSE47630 CEBPA 1050 8 6 26
GSE54993 CEBPA 1050 17 3 50
GSE54994 CEBPA 1050 7 9 37
GSE60625 CEBPA 1050 9 0 2
GSE74703 CEBPA 1050 4 4 28
GSE74704 CEBPA 1050 6 3 11
TCGA CEBPA 1050 18 12 66

Total number of gains: 134; Total number of losses: 55; Total Number of normals: 299.  


 

Somatic mutations of CEBPA:

 

Generating mutation plots.

 

Highly correlated genes for CEBPA:

 

Showing top 20/394 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
CEBPACCDC1370.731785303
CEBPAGEN10.705588303
CEBPALINC012340.70168303
CEBPAPIK3R30.698783303
CEBPARAB3IP0.694897403
CEBPAMAGED10.69332303
CEBPALOR0.689572303
CEBPAANKRD160.689312303
CEBPANCAPD20.682514303
CEBPACSTF2T0.682296303
CEBPADHRS130.679229404
CEBPAZNF7860.678536404
CEBPAUHRF1BP10.677648303
CEBPAFBXO50.677513303
CEBPADNAJC110.674769404
CEBPAEHMT20.674531303
CEBPAZNF6060.673014303
CEBPAABCF10.67005403
CEBPASLC39A110.66389303
CEBPAELAC20.661034303

For details and further investigation, click here