| Full name: long intergenic non-protein coding RNA 1234 | Alias Symbol: onco-lncRNA-32 | ||
| Type: non-coding RNA | Cytoband: 12q24.13 | ||
| Entrez ID: 100506465 | HGNC ID: HGNC:49757 | Ensembl Gene: ENSG00000249550 | OMIM ID: |
Expression of LINC01234:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC01234 | 100506465 | 1564220_a_at | 0.7330 | 0.5891 | |
| GSE26886 | LINC01234 | 100506465 | 1564220_a_at | 1.1176 | 0.0182 | |
| GSE45670 | LINC01234 | 100506465 | 1564220_a_at | 1.1448 | 0.0228 | |
| GSE53622 | LINC01234 | 100506465 | 7212 | 0.1904 | 0.0686 | |
| GSE53624 | LINC01234 | 100506465 | 105199 | -0.3522 | 0.0000 | |
| GSE63941 | LINC01234 | 100506465 | 1564220_a_at | 1.5402 | 0.2710 | |
| GSE77861 | LINC01234 | 100506465 | 1564220_a_at | 0.2185 | 0.1560 | |
| SRP133303 | LINC01234 | 100506465 | RNAseq | 0.5888 | 0.0278 | |
| SRP159526 | LINC01234 | 100506465 | RNAseq | 4.1206 | 0.0000 | |
| SRP193095 | LINC01234 | 100506465 | RNAseq | 1.4546 | 0.0000 |
Upregulated datasets: 4; Downregulated datasets: 0.
Survival by LINC01234 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC01234:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC01234 | 100506465 | 4 | 3 | 23 | |
| GSE20123 | LINC01234 | 100506465 | 4 | 3 | 23 | |
| GSE43470 | LINC01234 | 100506465 | 2 | 0 | 41 | |
| GSE46452 | LINC01234 | 100506465 | 9 | 1 | 49 | |
| GSE47630 | LINC01234 | 100506465 | 9 | 3 | 28 | |
| GSE54993 | LINC01234 | 100506465 | 0 | 5 | 65 | |
| GSE54994 | LINC01234 | 100506465 | 4 | 2 | 47 | |
| GSE60625 | LINC01234 | 100506465 | 0 | 0 | 11 | |
| GSE74703 | LINC01234 | 100506465 | 2 | 0 | 34 | |
| GSE74704 | LINC01234 | 100506465 | 2 | 2 | 16 |
Total number of gains: 36; Total number of losses: 19; Total Number of normals: 337.
Somatic mutations of LINC01234:
Generating mutation plots.
Highly correlated genes for LINC01234:
Showing top 20/101 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC01234 | POLA1 | 0.768278 | 3 | 0 | 3 |
| LINC01234 | SMARCB1 | 0.720716 | 3 | 0 | 3 |
| LINC01234 | PIK3R3 | 0.715928 | 3 | 0 | 3 |
| LINC01234 | SPSB2 | 0.710606 | 3 | 0 | 3 |
| LINC01234 | CEBPA | 0.70168 | 3 | 0 | 3 |
| LINC01234 | MLLT1 | 0.699083 | 3 | 0 | 3 |
| LINC01234 | ZNF641 | 0.693687 | 3 | 0 | 3 |
| LINC01234 | GSPT2 | 0.685718 | 3 | 0 | 3 |
| LINC01234 | LRIG1 | 0.671551 | 3 | 0 | 3 |
| LINC01234 | POLRMT | 0.669785 | 5 | 0 | 5 |
| LINC01234 | ILF3 | 0.669502 | 4 | 0 | 3 |
| LINC01234 | TSPYL5 | 0.669141 | 3 | 0 | 3 |
| LINC01234 | CHP2 | 0.662345 | 4 | 0 | 3 |
| LINC01234 | TRDN | 0.66196 | 4 | 0 | 3 |
| LINC01234 | MAGEA11 | 0.657869 | 4 | 0 | 3 |
| LINC01234 | SLC27A5 | 0.6547 | 4 | 0 | 3 |
| LINC01234 | DAG1 | 0.654052 | 3 | 0 | 3 |
| LINC01234 | HMGA1 | 0.649033 | 3 | 0 | 3 |
| LINC01234 | CCDC34 | 0.648356 | 4 | 0 | 3 |
| LINC01234 | ECSIT | 0.645096 | 4 | 0 | 3 |
For details and further investigation, click here
