| Full name: ATP binding cassette subfamily F member 1 | Alias Symbol: EST123147 | ||
| Type: protein-coding gene | Cytoband: 6p21.33 | ||
| Entrez ID: 23 | HGNC ID: HGNC:70 | Ensembl Gene: ENSG00000204574 | OMIM ID: 603429 |
| Drug and gene relationship at DGIdb | |||
Screen Evidence:
| |||
Expression of ABCF1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | ABCF1 | 23 | 200045_at | 0.5985 | 0.1299 | |
| GSE20347 | ABCF1 | 23 | 200045_at | 0.3686 | 0.0024 | |
| GSE23400 | ABCF1 | 23 | 200045_at | 0.4394 | 0.0000 | |
| GSE26886 | ABCF1 | 23 | 200045_at | -0.1095 | 0.5901 | |
| GSE29001 | ABCF1 | 23 | 200045_at | 0.2602 | 0.2885 | |
| GSE38129 | ABCF1 | 23 | 200045_at | 0.4441 | 0.0001 | |
| GSE45670 | ABCF1 | 23 | 200045_at | 0.5273 | 0.0004 | |
| GSE53622 | ABCF1 | 23 | 153154 | 0.5842 | 0.0000 | |
| GSE53624 | ABCF1 | 23 | 153154 | 0.7515 | 0.0000 | |
| GSE63941 | ABCF1 | 23 | 200045_at | 0.4435 | 0.3729 | |
| GSE77861 | ABCF1 | 23 | 200045_at | 0.3746 | 0.1482 | |
| GSE97050 | ABCF1 | 23 | A_23_P251660 | 0.3874 | 0.2464 | |
| SRP007169 | ABCF1 | 23 | RNAseq | 1.1107 | 0.0042 | |
| SRP008496 | ABCF1 | 23 | RNAseq | 1.1869 | 0.0000 | |
| SRP064894 | ABCF1 | 23 | RNAseq | 0.5773 | 0.0002 | |
| SRP133303 | ABCF1 | 23 | RNAseq | 0.4634 | 0.0004 | |
| SRP159526 | ABCF1 | 23 | RNAseq | 0.4779 | 0.0080 | |
| SRP193095 | ABCF1 | 23 | RNAseq | 0.4149 | 0.0001 | |
| SRP219564 | ABCF1 | 23 | RNAseq | 0.4358 | 0.1191 | |
| TCGA | ABCF1 | 23 | RNAseq | 0.0493 | 0.2613 |
Upregulated datasets: 2; Downregulated datasets: 0.
Survival by ABCF1 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of ABCF1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | ABCF1 | 23 | 5 | 1 | 24 | |
| GSE20123 | ABCF1 | 23 | 5 | 1 | 24 | |
| GSE43470 | ABCF1 | 23 | 5 | 1 | 37 | |
| GSE46452 | ABCF1 | 23 | 1 | 10 | 48 | |
| GSE47630 | ABCF1 | 23 | 7 | 3 | 30 | |
| GSE54993 | ABCF1 | 23 | 2 | 1 | 67 | |
| GSE54994 | ABCF1 | 23 | 11 | 4 | 38 | |
| GSE60625 | ABCF1 | 23 | 0 | 1 | 10 | |
| GSE74703 | ABCF1 | 23 | 5 | 0 | 31 | |
| GSE74704 | ABCF1 | 23 | 2 | 0 | 18 | |
| TCGA | ABCF1 | 23 | 18 | 16 | 62 |
Total number of gains: 61; Total number of losses: 38; Total Number of normals: 389.
Somatic mutations of ABCF1:
Generating mutation plots.
Highly correlated genes for ABCF1:
Showing top 20/1910 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| ABCF1 | SNRPC | 0.797278 | 10 | 0 | 10 |
| ABCF1 | SMARCAD1 | 0.796333 | 3 | 0 | 3 |
| ABCF1 | SLC39A3 | 0.796103 | 3 | 0 | 3 |
| ABCF1 | SPSB2 | 0.794553 | 3 | 0 | 3 |
| ABCF1 | SLC35B2 | 0.77931 | 3 | 0 | 3 |
| ABCF1 | TAF1C | 0.775075 | 3 | 0 | 3 |
| ABCF1 | RBM15B | 0.774879 | 3 | 0 | 3 |
| ABCF1 | EXOC6 | 0.772023 | 3 | 0 | 3 |
| ABCF1 | PRR14 | 0.77125 | 4 | 0 | 4 |
| ABCF1 | SSBP4 | 0.76302 | 3 | 0 | 3 |
| ABCF1 | SRPK1 | 0.762094 | 3 | 0 | 3 |
| ABCF1 | MMS22L | 0.76163 | 3 | 0 | 3 |
| ABCF1 | MRPS12 | 0.758735 | 8 | 0 | 8 |
| ABCF1 | RRP36 | 0.758118 | 6 | 0 | 6 |
| ABCF1 | PDRG1 | 0.756573 | 4 | 0 | 4 |
| ABCF1 | MAGOH | 0.754709 | 3 | 0 | 3 |
| ABCF1 | UCK2 | 0.74535 | 3 | 0 | 3 |
| ABCF1 | MAD2L2 | 0.744893 | 5 | 0 | 5 |
| ABCF1 | FAM89A | 0.743041 | 3 | 0 | 3 |
| ABCF1 | UQCC2 | 0.742385 | 3 | 0 | 3 |
For details and further investigation, click here
