| Full name: HLA complex group 18 | Alias Symbol: FLJ31598|FLJ25550|Em:AB014087.1 | ||
| Type: non-coding RNA | Cytoband: 6p22.1 | ||
| Entrez ID: 414777 | HGNC ID: HGNC:31337 | Ensembl Gene: ENSG00000231074 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of HCG18:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | HCG18 | 414777 | 225577_at | -0.1349 | 0.7364 | |
| GSE20347 | HCG18 | 414777 | 216527_at | 0.1884 | 0.4353 | |
| GSE23400 | HCG18 | 414777 | 216527_at | 0.0348 | 0.3957 | |
| GSE26886 | HCG18 | 414777 | 225584_at | -0.3478 | 0.0246 | |
| GSE29001 | HCG18 | 414777 | 216527_at | -0.0584 | 0.9085 | |
| GSE38129 | HCG18 | 414777 | 216527_at | 0.1425 | 0.4159 | |
| GSE45670 | HCG18 | 414777 | 225584_at | -0.2386 | 0.2080 | |
| GSE53622 | HCG18 | 414777 | 30953 | 0.6853 | 0.0000 | |
| GSE53624 | HCG18 | 414777 | 37390 | 0.4967 | 0.0000 | |
| GSE63941 | HCG18 | 414777 | 225584_at | 0.1160 | 0.7723 | |
| GSE77861 | HCG18 | 414777 | 225584_at | -0.2962 | 0.0817 | |
| SRP007169 | HCG18 | 414777 | RNAseq | -0.8613 | 0.0202 | |
| SRP008496 | HCG18 | 414777 | RNAseq | -0.9337 | 0.0002 | |
| SRP064894 | HCG18 | 414777 | RNAseq | -0.6255 | 0.0001 | |
| SRP133303 | HCG18 | 414777 | RNAseq | 0.2408 | 0.0675 | |
| SRP159526 | HCG18 | 414777 | RNAseq | -0.4375 | 0.0690 | |
| SRP193095 | HCG18 | 414777 | RNAseq | 0.1595 | 0.2131 | |
| SRP219564 | HCG18 | 414777 | RNAseq | -0.5606 | 0.2271 | |
| TCGA | HCG18 | 414777 | RNAseq | -0.1642 | 0.0027 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by HCG18 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of HCG18:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | HCG18 | 414777 | 5 | 1 | 24 | |
| GSE20123 | HCG18 | 414777 | 5 | 1 | 24 | |
| GSE43470 | HCG18 | 414777 | 5 | 1 | 37 | |
| GSE46452 | HCG18 | 414777 | 1 | 10 | 48 | |
| GSE47630 | HCG18 | 414777 | 7 | 3 | 30 | |
| GSE54993 | HCG18 | 414777 | 2 | 1 | 67 | |
| GSE54994 | HCG18 | 414777 | 11 | 4 | 38 | |
| GSE60625 | HCG18 | 414777 | 0 | 1 | 10 | |
| GSE74703 | HCG18 | 414777 | 5 | 0 | 31 | |
| GSE74704 | HCG18 | 414777 | 2 | 0 | 18 | |
| TCGA | HCG18 | 414777 | 17 | 16 | 63 |
Total number of gains: 60; Total number of losses: 38; Total Number of normals: 390.
Somatic mutations of HCG18:
Generating mutation plots.
Highly correlated genes for HCG18:
Showing top 20/89 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| HCG18 | LINC00276 | 0.807748 | 3 | 0 | 3 |
| HCG18 | LINC00662 | 0.794665 | 3 | 0 | 3 |
| HCG18 | SIRPB1 | 0.774694 | 3 | 0 | 3 |
| HCG18 | CCDC154 | 0.753833 | 3 | 0 | 3 |
| HCG18 | LINC00930 | 0.73781 | 4 | 0 | 4 |
| HCG18 | RAPGEF3 | 0.730746 | 4 | 0 | 3 |
| HCG18 | COL11A2 | 0.710412 | 3 | 0 | 3 |
| HCG18 | ZSCAN30 | 0.706357 | 4 | 0 | 3 |
| HCG18 | ZNF445 | 0.685481 | 4 | 0 | 3 |
| HCG18 | ZNF213-AS1 | 0.685131 | 3 | 0 | 3 |
| HCG18 | INSC | 0.675342 | 3 | 0 | 3 |
| HCG18 | CXorf38 | 0.674197 | 3 | 0 | 3 |
| HCG18 | LINC00917 | 0.669355 | 3 | 0 | 3 |
| HCG18 | FAM205A | 0.658474 | 3 | 0 | 3 |
| HCG18 | NKX6-3 | 0.65775 | 4 | 0 | 4 |
| HCG18 | TTC12 | 0.656389 | 3 | 0 | 3 |
| HCG18 | ZNF589 | 0.653343 | 4 | 0 | 3 |
| HCG18 | FAM106A | 0.652294 | 3 | 0 | 3 |
| HCG18 | F2RL3 | 0.650964 | 4 | 0 | 3 |
| HCG18 | TSPAN11 | 0.642809 | 3 | 0 | 3 |
For details and further investigation, click here
