| Full name: homeobox C4 | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 12q13.13 | ||
| Entrez ID: 3221 | HGNC ID: HGNC:5126 | Ensembl Gene: ENSG00000198353 | OMIM ID: 142974 |
Expression of HOXC4:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | HOXC4 | 3221 | 206194_at | -0.1734 | 0.6659 | |
| GSE20347 | HOXC4 | 3221 | 206194_at | -0.1896 | 0.3007 | |
| GSE23400 | HOXC4 | 3221 | 206194_at | -0.0277 | 0.5934 | |
| GSE26886 | HOXC4 | 3221 | 206194_at | -0.4109 | 0.0941 | |
| GSE29001 | HOXC4 | 3221 | 206194_at | -0.2830 | 0.5177 | |
| GSE38129 | HOXC4 | 3221 | 206194_at | -0.2581 | 0.0600 | |
| GSE45670 | HOXC4 | 3221 | 206194_at | -0.0152 | 0.9442 | |
| GSE53622 | HOXC4 | 3221 | 23281 | -0.6037 | 0.0000 | |
| GSE53624 | HOXC4 | 3221 | 23281 | -0.3573 | 0.0005 | |
| GSE63941 | HOXC4 | 3221 | 206194_at | -0.0709 | 0.9046 | |
| GSE77861 | HOXC4 | 3221 | 206194_at | -0.0268 | 0.8513 | |
| GSE97050 | HOXC4 | 3221 | A_33_P3300975 | -0.4645 | 0.2251 | |
| SRP064894 | HOXC4 | 3221 | RNAseq | -0.0047 | 0.9903 | |
| SRP133303 | HOXC4 | 3221 | RNAseq | -0.7445 | 0.0185 | |
| SRP159526 | HOXC4 | 3221 | RNAseq | -0.1187 | 0.8104 | |
| SRP219564 | HOXC4 | 3221 | RNAseq | -0.5979 | 0.1374 | |
| TCGA | HOXC4 | 3221 | RNAseq | -0.0848 | 0.5316 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by HOXC4 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of HOXC4:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | HOXC4 | 3221 | 4 | 1 | 25 | |
| GSE20123 | HOXC4 | 3221 | 4 | 1 | 25 | |
| GSE43470 | HOXC4 | 3221 | 3 | 0 | 40 | |
| GSE46452 | HOXC4 | 3221 | 7 | 1 | 51 | |
| GSE47630 | HOXC4 | 3221 | 10 | 2 | 28 | |
| GSE54993 | HOXC4 | 3221 | 0 | 5 | 65 | |
| GSE54994 | HOXC4 | 3221 | 4 | 1 | 48 | |
| GSE60625 | HOXC4 | 3221 | 0 | 0 | 11 | |
| GSE74703 | HOXC4 | 3221 | 3 | 0 | 33 | |
| GSE74704 | HOXC4 | 3221 | 3 | 1 | 16 | |
| TCGA | HOXC4 | 3221 | 15 | 11 | 70 |
Total number of gains: 53; Total number of losses: 23; Total Number of normals: 412.
Somatic mutations of HOXC4:
Generating mutation plots.
Highly correlated genes for HOXC4:
Showing all 17 correlated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| HOXC4 | ANO2 | 0.64449 | 3 | 0 | 3 |
| HOXC4 | HBQ1 | 0.607864 | 4 | 0 | 3 |
| HOXC4 | CRYGC | 0.601112 | 3 | 0 | 3 |
| HOXC4 | AQP6 | 0.573358 | 5 | 0 | 4 |
| HOXC4 | RPS6KA6 | 0.566929 | 3 | 0 | 3 |
| HOXC4 | PCCA | 0.561435 | 4 | 0 | 3 |
| HOXC4 | KIF17 | 0.560242 | 4 | 0 | 3 |
| HOXC4 | ZSWIM4 | 0.559214 | 3 | 0 | 3 |
| HOXC4 | PNLIPRP1 | 0.556548 | 3 | 0 | 3 |
| HOXC4 | GRIK3 | 0.555621 | 4 | 0 | 3 |
| HOXC4 | ADAMTSL4 | 0.551608 | 4 | 0 | 3 |
| HOXC4 | MYO15B | 0.546077 | 5 | 0 | 4 |
| HOXC4 | SIRT3 | 0.541118 | 5 | 0 | 3 |
| HOXC4 | TARSL2 | 0.534607 | 3 | 0 | 3 |
| HOXC4 | ATP1B1 | 0.520876 | 5 | 0 | 3 |
| HOXC4 | FAM149A | 0.508579 | 4 | 0 | 3 |
| HOXC4 | FSCN3 | 0.50014 | 5 | 0 | 4 |
For details and further investigation, click here
