| Full name: long intergenic non-protein coding RNA 260 | Alias Symbol: MGC5457 | ||
| Type: non-coding RNA | Cytoband: 1q32.1 | ||
| Entrez ID: 84719 | HGNC ID: HGNC:28770 | Ensembl Gene: | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00260:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00260 | 84719 | 210711_at | 0.4689 | 0.3521 | |
| GSE20347 | LINC00260 | 84719 | 210711_at | 0.1221 | 0.2460 | |
| GSE23400 | LINC00260 | 84719 | 210711_at | 0.0249 | 0.5381 | |
| GSE26886 | LINC00260 | 84719 | 210711_at | 0.1825 | 0.2603 | |
| GSE29001 | LINC00260 | 84719 | 210711_at | 0.3053 | 0.0446 | |
| GSE38129 | LINC00260 | 84719 | 210711_at | 0.0145 | 0.9123 | |
| GSE45670 | LINC00260 | 84719 | 210711_at | 0.2058 | 0.2079 | |
| GSE63941 | LINC00260 | 84719 | 210711_at | -0.3795 | 0.0368 | |
| GSE77861 | LINC00260 | 84719 | 210711_at | 0.1246 | 0.2943 | |
| GSE97050 | LINC00260 | 84719 | A_33_P3210810 | -0.1882 | 0.5664 | |
| SRP133303 | LINC00260 | 84719 | RNAseq | 0.5072 | 0.0110 | |
| SRP159526 | LINC00260 | 84719 | RNAseq | 0.7720 | 0.1932 | |
| SRP193095 | LINC00260 | 84719 | RNAseq | 0.5771 | 0.0108 |
Upregulated datasets: 0; Downregulated datasets: 0.
Copy number change of LINC00260:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00260 | 84719 | 11 | 0 | 19 | |
| GSE20123 | LINC00260 | 84719 | 11 | 0 | 19 | |
| GSE43470 | LINC00260 | 84719 | 6 | 0 | 37 | |
| GSE46452 | LINC00260 | 84719 | 3 | 1 | 55 | |
| GSE47630 | LINC00260 | 84719 | 14 | 0 | 26 | |
| GSE54993 | LINC00260 | 84719 | 0 | 6 | 64 | |
| GSE54994 | LINC00260 | 84719 | 15 | 0 | 38 | |
| GSE60625 | LINC00260 | 84719 | 0 | 0 | 11 | |
| GSE74703 | LINC00260 | 84719 | 6 | 0 | 30 | |
| GSE74704 | LINC00260 | 84719 | 5 | 0 | 15 |
Total number of gains: 71; Total number of losses: 7; Total Number of normals: 314.
Somatic mutations of LINC00260:
Generating mutation plots.
Highly correlated genes for LINC00260:
Showing top 20/79 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00260 | PPP1R1C | 0.651952 | 3 | 0 | 3 |
| LINC00260 | PROC | 0.648642 | 3 | 0 | 3 |
| LINC00260 | FAIM2 | 0.635683 | 4 | 0 | 4 |
| LINC00260 | RNF122 | 0.632913 | 3 | 0 | 3 |
| LINC00260 | NEUROG1 | 0.625707 | 3 | 0 | 3 |
| LINC00260 | BIRC7 | 0.607269 | 4 | 0 | 3 |
| LINC00260 | COL11A2 | 0.602646 | 3 | 0 | 3 |
| LINC00260 | FADS3 | 0.597147 | 3 | 0 | 3 |
| LINC00260 | FUT8-AS1 | 0.594063 | 4 | 0 | 3 |
| LINC00260 | PHLPP2 | 0.593805 | 3 | 0 | 3 |
| LINC00260 | CEP97 | 0.593463 | 3 | 0 | 3 |
| LINC00260 | TMEM64 | 0.592473 | 3 | 0 | 3 |
| LINC00260 | RUNX1-IT1 | 0.592326 | 4 | 0 | 3 |
| LINC00260 | ESR1 | 0.591572 | 3 | 0 | 3 |
| LINC00260 | MZT2B | 0.58831 | 8 | 0 | 6 |
| LINC00260 | WDPCP | 0.587107 | 4 | 0 | 3 |
| LINC00260 | SSX3 | 0.583693 | 4 | 0 | 3 |
| LINC00260 | MAPK11 | 0.579591 | 3 | 0 | 3 |
| LINC00260 | OR10H1 | 0.579327 | 5 | 0 | 3 |
| LINC00260 | ALMS1 | 0.576518 | 5 | 0 | 4 |
For details and further investigation, click here
