| Full name: long intergenic non-protein coding RNA 261 | Alias Symbol: bA216C10.1|HCCDR1|TCONS_00027846|ALIEN|DEANR1|onco-lncRNA-17|FALCOR | ||
| Type: non-coding RNA | Cytoband: 20p11.21 | ||
| Entrez ID: 140828 | HGNC ID: HGNC:16189 | Ensembl Gene: ENSG00000259974 | OMIM ID: |
Expression of LINC00261:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00261 | 140828 | 228004_at | -0.1198 | 0.7429 | |
| GSE26886 | LINC00261 | 140828 | 228004_at | -0.0330 | 0.8270 | |
| GSE45670 | LINC00261 | 140828 | 228004_at | -0.1241 | 0.5448 | |
| GSE53622 | LINC00261 | 140828 | 139120 | 0.2258 | 0.0017 | |
| GSE53624 | LINC00261 | 140828 | 139120 | 0.2304 | 0.0198 | |
| GSE63941 | LINC00261 | 140828 | 228004_at | 0.2888 | 0.1777 | |
| GSE77861 | LINC00261 | 140828 | 228004_at | -0.0129 | 0.9410 | |
| SRP133303 | LINC00261 | 140828 | RNAseq | -2.9725 | 0.0000 |
Upregulated datasets: 0; Downregulated datasets: 1.
Survival by LINC00261 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00261:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00261 | 140828 | 13 | 1 | 16 | |
| GSE20123 | LINC00261 | 140828 | 13 | 1 | 16 | |
| GSE43470 | LINC00261 | 140828 | 10 | 1 | 32 | |
| GSE46452 | LINC00261 | 140828 | 27 | 1 | 31 | |
| GSE47630 | LINC00261 | 140828 | 17 | 4 | 19 | |
| GSE54993 | LINC00261 | 140828 | 0 | 17 | 53 | |
| GSE54994 | LINC00261 | 140828 | 26 | 2 | 25 | |
| GSE60625 | LINC00261 | 140828 | 0 | 0 | 11 | |
| GSE74703 | LINC00261 | 140828 | 8 | 1 | 27 | |
| GSE74704 | LINC00261 | 140828 | 7 | 1 | 12 | |
| TCGA | LINC00261 | 140828 | 42 | 11 | 43 |
Total number of gains: 163; Total number of losses: 40; Total Number of normals: 285.
Somatic mutations of LINC00261:
Generating mutation plots.
Highly correlated genes for LINC00261:
Showing all 17 correlated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00261 | TFF2 | 0.773625 | 3 | 0 | 3 |
| LINC00261 | DNAJC9-AS1 | 0.67752 | 3 | 0 | 3 |
| LINC00261 | ETV1 | 0.675417 | 3 | 0 | 3 |
| LINC00261 | CAPN8 | 0.668374 | 3 | 0 | 3 |
| LINC00261 | AGR3 | 0.638267 | 3 | 0 | 3 |
| LINC00261 | TFF1 | 0.626428 | 3 | 0 | 3 |
| LINC00261 | CA1 | 0.619289 | 3 | 0 | 3 |
| LINC00261 | ALDH8A1 | 0.608914 | 3 | 0 | 3 |
| LINC00261 | SIRPD | 0.584618 | 5 | 0 | 3 |
| LINC00261 | SPINT3 | 0.578763 | 3 | 0 | 3 |
| LINC00261 | PRB1 | 0.578275 | 4 | 0 | 4 |
| LINC00261 | CNBD1 | 0.571288 | 3 | 0 | 3 |
| LINC00261 | MCHR2-AS1 | 0.564125 | 3 | 0 | 3 |
| LINC00261 | VIPR1 | 0.537259 | 4 | 0 | 3 |
| LINC00261 | PRB4 | 0.524116 | 5 | 0 | 3 |
| LINC00261 | OXGR1 | 0.518844 | 3 | 0 | 3 |
| LINC00261 | SPATA24 | 0.507557 | 4 | 0 | 3 |
For details and further investigation, click here
