| Full name: long intergenic non-protein coding RNA 544 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 13q12.3 | ||
| Entrez ID: 440131 | HGNC ID: HGNC:43679 | Ensembl Gene: ENSG00000122043 | OMIM ID: |
Expression of LINC00544:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00544 | 440131 | 233804_at | -0.1312 | 0.5355 | |
| GSE26886 | LINC00544 | 440131 | 233804_at | 0.0595 | 0.5548 | |
| GSE45670 | LINC00544 | 440131 | 233804_at | -0.0315 | 0.7105 | |
| GSE53622 | LINC00544 | 440131 | 18106 | 0.4602 | 0.0000 | |
| GSE53624 | LINC00544 | 440131 | 18106 | 0.6140 | 0.0000 | |
| GSE63941 | LINC00544 | 440131 | 233804_at | -0.0293 | 0.8792 | |
| GSE77861 | LINC00544 | 440131 | 233804_at | -0.1387 | 0.2571 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00544 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00544:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00544 | 440131 | 1 | 13 | 16 | |
| GSE20123 | LINC00544 | 440131 | 1 | 12 | 17 | |
| GSE43470 | LINC00544 | 440131 | 2 | 12 | 29 | |
| GSE46452 | LINC00544 | 440131 | 0 | 33 | 26 | |
| GSE47630 | LINC00544 | 440131 | 2 | 27 | 11 | |
| GSE54993 | LINC00544 | 440131 | 12 | 2 | 56 | |
| GSE54994 | LINC00544 | 440131 | 2 | 14 | 37 | |
| GSE60625 | LINC00544 | 440131 | 0 | 3 | 8 | |
| GSE74703 | LINC00544 | 440131 | 2 | 9 | 25 | |
| GSE74704 | LINC00544 | 440131 | 0 | 10 | 10 | |
| TCGA | LINC00544 | 440131 | 8 | 37 | 51 |
Total number of gains: 30; Total number of losses: 172; Total Number of normals: 286.
Somatic mutations of LINC00544:
Generating mutation plots.
Highly correlated genes for LINC00544:
Showing top 20/93 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00544 | FSHB | 0.814203 | 3 | 0 | 3 |
| LINC00544 | ZGLP1 | 0.732676 | 3 | 0 | 3 |
| LINC00544 | HRH2 | 0.723306 | 3 | 0 | 3 |
| LINC00544 | DUX1 | 0.696596 | 3 | 0 | 3 |
| LINC00544 | CACNG7 | 0.690752 | 3 | 0 | 3 |
| LINC00544 | CLDN2 | 0.674799 | 3 | 0 | 3 |
| LINC00544 | SLC32A1 | 0.672066 | 3 | 0 | 3 |
| LINC00544 | NKAIN1 | 0.669393 | 3 | 0 | 3 |
| LINC00544 | CCIN | 0.667737 | 3 | 0 | 3 |
| LINC00544 | SLC22A6 | 0.665584 | 4 | 0 | 4 |
| LINC00544 | C20orf85 | 0.660523 | 3 | 0 | 3 |
| LINC00544 | WFDC8 | 0.655621 | 3 | 0 | 3 |
| LINC00544 | ZNF853 | 0.65528 | 4 | 0 | 3 |
| LINC00544 | ISLR2 | 0.64596 | 3 | 0 | 3 |
| LINC00544 | PDILT | 0.645097 | 3 | 0 | 3 |
| LINC00544 | CD300LG | 0.643494 | 3 | 0 | 3 |
| LINC00544 | CD244 | 0.636549 | 3 | 0 | 3 |
| LINC00544 | RETN | 0.633603 | 4 | 0 | 3 |
| LINC00544 | APOB | 0.630036 | 3 | 0 | 3 |
| LINC00544 | KLHL17 | 0.627836 | 4 | 0 | 3 |
For details and further investigation, click here
