| Full name: long intergenic non-protein coding RNA 620 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 3p25.1 | ||
| Entrez ID: 285375 | HGNC ID: HGNC:44223 | Ensembl Gene: ENSG00000224514 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00620:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00620 | 285375 | 1563043_at | -0.0585 | 0.8359 | |
| GSE26886 | LINC00620 | 285375 | 1563043_at | 0.0436 | 0.7201 | |
| GSE45670 | LINC00620 | 285375 | 1563043_at | 0.1292 | 0.1387 | |
| GSE53622 | LINC00620 | 285375 | 70593 | 0.1014 | 0.2402 | |
| GSE53624 | LINC00620 | 285375 | 70593 | -0.0055 | 0.9617 | |
| GSE63941 | LINC00620 | 285375 | 1563043_at | 0.1521 | 0.2475 | |
| GSE77861 | LINC00620 | 285375 | 1563043_at | -0.1118 | 0.2282 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00620 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00620:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00620 | 285375 | 2 | 17 | 11 | |
| GSE20123 | LINC00620 | 285375 | 2 | 17 | 11 | |
| GSE43470 | LINC00620 | 285375 | 0 | 21 | 22 | |
| GSE46452 | LINC00620 | 285375 | 2 | 17 | 40 | |
| GSE47630 | LINC00620 | 285375 | 2 | 23 | 15 | |
| GSE54993 | LINC00620 | 285375 | 6 | 1 | 63 | |
| GSE54994 | LINC00620 | 285375 | 1 | 32 | 20 | |
| GSE60625 | LINC00620 | 285375 | 5 | 0 | 6 | |
| GSE74703 | LINC00620 | 285375 | 0 | 17 | 19 | |
| GSE74704 | LINC00620 | 285375 | 1 | 10 | 9 | |
| TCGA | LINC00620 | 285375 | 2 | 68 | 26 |
Total number of gains: 23; Total number of losses: 223; Total Number of normals: 242.
Somatic mutations of LINC00620:
Generating mutation plots.
Highly correlated genes for LINC00620:
Showing top 20/211 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00620 | GRM1 | 0.740087 | 3 | 0 | 3 |
| LINC00620 | FAM222A-AS1 | 0.737931 | 3 | 0 | 3 |
| LINC00620 | TSGA10IP | 0.734724 | 4 | 0 | 4 |
| LINC00620 | RBAKDN | 0.716723 | 3 | 0 | 3 |
| LINC00620 | CLDN9 | 0.716278 | 4 | 0 | 4 |
| LINC00620 | SYCE1 | 0.676972 | 3 | 0 | 3 |
| LINC00620 | ALPI | 0.676426 | 3 | 0 | 3 |
| LINC00620 | DAOA | 0.674314 | 3 | 0 | 3 |
| LINC00620 | CDH24 | 0.664153 | 3 | 0 | 3 |
| LINC00620 | LRRC71 | 0.657676 | 3 | 0 | 3 |
| LINC00620 | SLC18A3 | 0.655249 | 3 | 0 | 3 |
| LINC00620 | CAMKV | 0.647033 | 3 | 0 | 3 |
| LINC00620 | DCD | 0.646458 | 3 | 0 | 3 |
| LINC00620 | SLC39A5 | 0.639437 | 5 | 0 | 4 |
| LINC00620 | RXFP3 | 0.636747 | 3 | 0 | 3 |
| LINC00620 | CACNG7 | 0.635671 | 4 | 0 | 3 |
| LINC00620 | ZNF843 | 0.634148 | 3 | 0 | 3 |
| LINC00620 | LINC01122 | 0.633653 | 4 | 0 | 4 |
| LINC00620 | KRTAP4-8 | 0.632962 | 4 | 0 | 3 |
| LINC00620 | MIR670HG | 0.632461 | 4 | 0 | 3 |
For details and further investigation, click here
