| Full name: long intergenic non-protein coding RNA 642 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 14q32.11 | ||
| Entrez ID: 400238 | HGNC ID: HGNC:44293 | Ensembl Gene: ENSG00000233208 | OMIM ID: |
Expression of LINC00642:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00642 | 400238 | 1557656_at | 0.0264 | 0.9307 | |
| GSE26886 | LINC00642 | 400238 | 1557656_at | -0.0364 | 0.8467 | |
| GSE45670 | LINC00642 | 400238 | 1557656_at | -0.0264 | 0.8257 | |
| GSE53622 | LINC00642 | 400238 | 83214 | 0.3294 | 0.0503 | |
| GSE53624 | LINC00642 | 400238 | 83214 | 0.3379 | 0.0195 | |
| GSE63941 | LINC00642 | 400238 | 1557656_at | 0.4922 | 0.0057 | |
| GSE77861 | LINC00642 | 400238 | 1557656_at | 0.0569 | 0.5975 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00642 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00642:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00642 | 400238 | 9 | 5 | 16 | |
| GSE20123 | LINC00642 | 400238 | 9 | 5 | 16 | |
| GSE43470 | LINC00642 | 400238 | 7 | 3 | 33 | |
| GSE46452 | LINC00642 | 400238 | 16 | 3 | 40 | |
| GSE47630 | LINC00642 | 400238 | 11 | 8 | 21 | |
| GSE54993 | LINC00642 | 400238 | 3 | 8 | 59 | |
| GSE54994 | LINC00642 | 400238 | 19 | 4 | 30 | |
| GSE60625 | LINC00642 | 400238 | 0 | 2 | 9 | |
| GSE74703 | LINC00642 | 400238 | 6 | 3 | 27 | |
| GSE74704 | LINC00642 | 400238 | 4 | 4 | 12 | |
| TCGA | LINC00642 | 400238 | 30 | 21 | 45 |
Total number of gains: 114; Total number of losses: 66; Total Number of normals: 308.
Somatic mutations of LINC00642:
Generating mutation plots.
Highly correlated genes for LINC00642:
Showing top 20/217 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00642 | EPX | 0.757056 | 3 | 0 | 3 |
| LINC00642 | ANKRD53 | 0.753352 | 3 | 0 | 3 |
| LINC00642 | GIGYF1 | 0.741568 | 3 | 0 | 3 |
| LINC00642 | DMWD | 0.726931 | 5 | 0 | 5 |
| LINC00642 | ADAP1 | 0.710449 | 3 | 0 | 3 |
| LINC00642 | SIGLEC9 | 0.699938 | 3 | 0 | 3 |
| LINC00642 | GSX1 | 0.698651 | 4 | 0 | 4 |
| LINC00642 | EXOC3L2 | 0.691484 | 5 | 0 | 5 |
| LINC00642 | TSGA13 | 0.683935 | 3 | 0 | 3 |
| LINC00642 | BTNL8 | 0.681386 | 3 | 0 | 3 |
| LINC00642 | SLC25A35 | 0.679941 | 3 | 0 | 3 |
| LINC00642 | STAC2 | 0.677707 | 3 | 0 | 3 |
| LINC00642 | PNPLA2 | 0.668882 | 5 | 0 | 4 |
| LINC00642 | C2orf81 | 0.662965 | 3 | 0 | 3 |
| LINC00642 | SLC8A3 | 0.662395 | 4 | 0 | 3 |
| LINC00642 | LCN10 | 0.661275 | 3 | 0 | 3 |
| LINC00642 | GRIP2 | 0.658982 | 5 | 0 | 4 |
| LINC00642 | BEST1 | 0.658232 | 4 | 0 | 3 |
| LINC00642 | LINC01069 | 0.657944 | 3 | 0 | 3 |
| LINC00642 | CABP4 | 0.656204 | 4 | 0 | 3 |
For details and further investigation, click here
