| Full name: long intergenic non-protein coding RNA 838 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 10p11.22 | ||
| Entrez ID: 100505583 | HGNC ID: HGNC:44963 | Ensembl Gene: ENSG00000261683 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00838:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00838 | 100505583 | 1561984_at | -0.0608 | 0.8064 | |
| GSE26886 | LINC00838 | 100505583 | 1561984_at | -0.1184 | 0.2470 | |
| GSE45670 | LINC00838 | 100505583 | 1561984_at | -0.1273 | 0.0727 | |
| GSE53622 | LINC00838 | 100505583 | 29374 | 0.0572 | 0.3718 | |
| GSE53624 | LINC00838 | 100505583 | 110730 | -0.0653 | 0.3328 | |
| GSE63941 | LINC00838 | 100505583 | 1561984_at | -0.0151 | 0.9331 | |
| GSE77861 | LINC00838 | 100505583 | 1561984_at | -0.1329 | 0.1994 | |
| SRP133303 | LINC00838 | 100505583 | RNAseq | -0.1905 | 0.2345 | |
| SRP193095 | LINC00838 | 100505583 | RNAseq | 0.1069 | 0.5142 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00838 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00838:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00838 | 100505583 | 5 | 7 | 18 | |
| GSE20123 | LINC00838 | 100505583 | 5 | 6 | 19 | |
| GSE43470 | LINC00838 | 100505583 | 3 | 4 | 36 | |
| GSE46452 | LINC00838 | 100505583 | 1 | 14 | 44 | |
| GSE47630 | LINC00838 | 100505583 | 6 | 14 | 20 | |
| GSE54993 | LINC00838 | 100505583 | 9 | 0 | 61 | |
| GSE54994 | LINC00838 | 100505583 | 3 | 8 | 42 | |
| GSE60625 | LINC00838 | 100505583 | 0 | 0 | 11 | |
| GSE74703 | LINC00838 | 100505583 | 2 | 2 | 32 | |
| GSE74704 | LINC00838 | 100505583 | 0 | 5 | 15 | |
| TCGA | LINC00838 | 100505583 | 16 | 23 | 57 |
Total number of gains: 50; Total number of losses: 83; Total Number of normals: 355.
Somatic mutations of LINC00838:
Generating mutation plots.
Highly correlated genes for LINC00838:
Showing all 14 correlated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00838 | LINC01111 | 0.659154 | 3 | 0 | 3 |
| LINC00838 | RNF157 | 0.61265 | 3 | 0 | 3 |
| LINC00838 | SRRM4 | 0.609101 | 3 | 0 | 3 |
| LINC00838 | CNR2 | 0.590867 | 3 | 0 | 3 |
| LINC00838 | ENPP3 | 0.581593 | 4 | 0 | 3 |
| LINC00838 | APOBEC2 | 0.578226 | 3 | 0 | 3 |
| LINC00838 | RNASE2 | 0.57692 | 3 | 0 | 3 |
| LINC00838 | DPP6 | 0.562465 | 3 | 0 | 3 |
| LINC00838 | C2orf16 | 0.561292 | 4 | 0 | 3 |
| LINC00838 | CHRNA2 | 0.556639 | 3 | 0 | 3 |
| LINC00838 | C17orf78 | 0.55601 | 3 | 0 | 3 |
| LINC00838 | NEUROD1 | 0.535373 | 3 | 0 | 3 |
| LINC00838 | CACNG6 | 0.520357 | 4 | 0 | 3 |
| LINC00838 | UNC13A | 0.507798 | 4 | 0 | 3 |
For details and further investigation, click here
