CHRNA2

 

Full name: cholinergic receptor nicotinic alpha 2 subunit Alias Symbol: 
Type: protein-coding gene Cytoband: 8p21.2
Entrez ID: 1135 HGNC ID: HGNC:1956 Ensembl Gene: ENSG00000120903 OMIM ID: 118502
Drug and gene relationship at DGIdb

 

Expression of CHRNA2:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 CHRNA2 1135 207868_at -0.2066 0.4794
GSE20347 CHRNA2 1135 207868_at 0.0765 0.5475
GSE23400 CHRNA2 1135 207868_at -0.1875 0.0000
GSE26886 CHRNA2 1135 207868_at -0.2289 0.0348
GSE29001 CHRNA2 1135 207868_at -0.1692 0.3037
GSE38129 CHRNA2 1135 207868_at -0.0544 0.5879
GSE45670 CHRNA2 1135 207868_at 0.0853 0.3782
GSE53622 CHRNA2 1135 17231 0.1555 0.1723
GSE53624 CHRNA2 1135 17231 -0.5201 0.0000
GSE63941 CHRNA2 1135 207868_at 0.0028 0.9859
GSE77861 CHRNA2 1135 207868_at -0.2226 0.0269
GSE97050 CHRNA2 1135 A_23_P251443 -0.0491 0.9022
TCGA CHRNA2 1135 RNAseq -0.2210 0.8429

Upregulated datasets: 0; Downregulated datasets: 0.  


 

Survival by CHRNA2 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  


Copy number change of CHRNA2:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 CHRNA2 1135 4 11 15
GSE20123 CHRNA2 1135 4 11 15
GSE43470 CHRNA2 1135 4 7 32
GSE46452 CHRNA2 1135 13 13 33
GSE47630 CHRNA2 1135 10 8 22
GSE54993 CHRNA2 1135 2 15 53
GSE54994 CHRNA2 1135 10 15 28
GSE60625 CHRNA2 1135 3 0 8
GSE74703 CHRNA2 1135 4 6 26
GSE74704 CHRNA2 1135 3 8 9
TCGA CHRNA2 1135 16 43 37

Total number of gains: 73; Total number of losses: 137; Total Number of normals: 278.  


 

Somatic mutations of CHRNA2:

 

Generating mutation plots.

 

Highly correlated genes for CHRNA2:

 

Showing top 20/1350 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
CHRNA2SPEF20.764831303
CHRNA2STRC0.759961303
CHRNA2FAM171A20.753912404
CHRNA2MAGEA80.749596303
CHRNA2FOXA30.742863303
CHRNA2OR4D60.730171303
CHRNA2SPACA30.722793303
CHRNA2SLC6A190.72206303
CHRNA2SLC5A40.718636606
CHRNA2RBAKDN0.717275303
CHRNA2KRTAP10-120.715255303
CHRNA2CLHC10.713494303
CHRNA2SLC39A50.713417303
CHRNA2CHRM20.711866505
CHRNA2ZNF8350.711196504
CHRNA2PLA2G2C0.709162303
CHRNA2SYPL20.706578303
CHRNA2C20orf1730.704284404
CHRNA2SPINT30.700212909
CHRNA2ART10.699965706

For details and further investigation, click here