| Full name: long intergenic non-protein coding RNA 887 | Alias Symbol: linc-ATP13A4-8|HEIRCC | ||
| Type: non-coding RNA | Cytoband: 3q29 | ||
| Entrez ID: 100131551 | HGNC ID: HGNC:48574 | Ensembl Gene: ENSG00000214145 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00887:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00887 | 100131551 | 1564485_at | -0.0276 | 0.9263 | |
| GSE26886 | LINC00887 | 100131551 | 1564485_at | -0.0827 | 0.4615 | |
| GSE45670 | LINC00887 | 100131551 | 1564485_at | 0.1228 | 0.5041 | |
| GSE53622 | LINC00887 | 100131551 | 57109 | -0.0163 | 0.8866 | |
| GSE53624 | LINC00887 | 100131551 | 57109 | -0.3728 | 0.0002 | |
| GSE63941 | LINC00887 | 100131551 | 1564485_at | 0.0662 | 0.7241 | |
| GSE77861 | LINC00887 | 100131551 | 1564485_at | -0.0241 | 0.8379 | |
| SRP064894 | LINC00887 | 100131551 | RNAseq | -1.7773 | 0.0000 | |
| SRP133303 | LINC00887 | 100131551 | RNAseq | 0.0131 | 0.9712 | |
| SRP159526 | LINC00887 | 100131551 | RNAseq | -2.6988 | 0.0007 |
Upregulated datasets: 0; Downregulated datasets: 2.
Survival by LINC00887 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00887:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00887 | 100131551 | 22 | 0 | 8 | |
| GSE20123 | LINC00887 | 100131551 | 22 | 0 | 8 | |
| GSE43470 | LINC00887 | 100131551 | 24 | 0 | 19 | |
| GSE46452 | LINC00887 | 100131551 | 19 | 1 | 39 | |
| GSE47630 | LINC00887 | 100131551 | 27 | 2 | 11 | |
| GSE54993 | LINC00887 | 100131551 | 1 | 21 | 48 | |
| GSE54994 | LINC00887 | 100131551 | 41 | 0 | 12 | |
| GSE60625 | LINC00887 | 100131551 | 0 | 6 | 5 | |
| GSE74703 | LINC00887 | 100131551 | 20 | 0 | 16 | |
| GSE74704 | LINC00887 | 100131551 | 14 | 0 | 6 | |
| TCGA | LINC00887 | 100131551 | 77 | 0 | 19 |
Total number of gains: 267; Total number of losses: 30; Total Number of normals: 191.
Somatic mutations of LINC00887:
Generating mutation plots.
Highly correlated genes for LINC00887:
Showing top 20/56 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00887 | MYOZ3 | 0.736747 | 3 | 0 | 3 |
| LINC00887 | PRR7-AS1 | 0.708634 | 3 | 0 | 3 |
| LINC00887 | STMN4 | 0.70827 | 3 | 0 | 3 |
| LINC00887 | EP300-AS1 | 0.701176 | 3 | 0 | 3 |
| LINC00887 | OR2H1 | 0.691692 | 4 | 0 | 4 |
| LINC00887 | CLTCL1 | 0.686882 | 3 | 0 | 3 |
| LINC00887 | KCNJ13 | 0.670794 | 3 | 0 | 3 |
| LINC00887 | SLC39A5 | 0.654298 | 3 | 0 | 3 |
| LINC00887 | IFNL2 | 0.644824 | 3 | 0 | 3 |
| LINC00887 | OLIG3 | 0.643473 | 3 | 0 | 3 |
| LINC00887 | RIMBP2 | 0.641481 | 3 | 0 | 3 |
| LINC00887 | OR51B2 | 0.636653 | 3 | 0 | 3 |
| LINC00887 | PAX2 | 0.635452 | 3 | 0 | 3 |
| LINC00887 | C8orf74 | 0.63184 | 3 | 0 | 3 |
| LINC00887 | C10orf62 | 0.63039 | 3 | 0 | 3 |
| LINC00887 | CELA3A | 0.629989 | 3 | 0 | 3 |
| LINC00887 | SLC22A12 | 0.626798 | 3 | 0 | 3 |
| LINC00887 | GDPGP1 | 0.626406 | 3 | 0 | 3 |
| LINC00887 | TMEM105 | 0.623341 | 5 | 0 | 4 |
| LINC00887 | TMEM184A | 0.621596 | 3 | 0 | 3 |
For details and further investigation, click here
