RBM34

 

Full name: RNA binding motif protein 34 Alias Symbol: KIAA0117
Type: protein-coding gene Cytoband: 1q42.3
Entrez ID: 23029 HGNC ID: HGNC:28965 Ensembl Gene: ENSG00000188739 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of RBM34:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 RBM34 23029 214942_at 0.1858 0.5702
GSE20347 RBM34 23029 214942_at 0.1218 0.1491
GSE23400 RBM34 23029 214942_at 0.0718 0.0100
GSE26886 RBM34 23029 214942_at 0.6425 0.0127
GSE29001 RBM34 23029 214942_at 0.6783 0.1106
GSE38129 RBM34 23029 214942_at 0.2221 0.0090
GSE45670 RBM34 23029 214942_at 0.2711 0.0065
GSE53622 RBM34 23029 113694 0.0036 0.9847
GSE53624 RBM34 23029 30380 -0.0602 0.7216
GSE63941 RBM34 23029 214942_at 0.4353 0.0939
GSE77861 RBM34 23029 214942_at 0.0020 0.9880
GSE97050 RBM34 23029 A_23_P436476 0.4089 0.1556
SRP007169 RBM34 23029 RNAseq -0.3872 0.2533
SRP008496 RBM34 23029 RNAseq 0.0288 0.9071
SRP064894 RBM34 23029 RNAseq 0.2891 0.0583
SRP133303 RBM34 23029 RNAseq 0.4367 0.0017
SRP159526 RBM34 23029 RNAseq -0.0472 0.8950
SRP193095 RBM34 23029 RNAseq 0.0409 0.7148
SRP219564 RBM34 23029 RNAseq 0.1776 0.5778
TCGA RBM34 23029 RNAseq 0.2317 0.0001

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by RBM34 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of RBM34:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 RBM34 23029 10 0 20
GSE20123 RBM34 23029 11 0 19
GSE43470 RBM34 23029 8 0 35
GSE46452 RBM34 23029 4 2 53
GSE47630 RBM34 23029 15 0 25
GSE54993 RBM34 23029 0 6 64
GSE54994 RBM34 23029 16 0 37
GSE60625 RBM34 23029 0 0 11
GSE74703 RBM34 23029 8 0 28
GSE74704 RBM34 23029 5 0 15
TCGA RBM34 23029 44 3 49

Total number of gains: 121; Total number of losses: 11; Total Number of normals: 356.  

 

Somatic mutations of RBM34:

 

Generating mutation plots.

 

Highly correlated genes for RBM34:

 

Showing top 20/555 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
RBM34MRPL10.804559303
RBM34NOL90.77006303
RBM34DDX550.765997303
RBM34TPR0.762395303
RBM34SDAD10.757025303
RBM34KLHL80.751527303
RBM34PPP1R370.745535404
RBM34NFXL10.740185404
RBM34MPHOSPH90.727807303
RBM34POLG0.725239303
RBM34CPNE80.724757404
RBM34FAM171B0.714931303
RBM34MRPS330.712342303
RBM34IFT460.710854303
RBM34PMPCB0.707581303
RBM34NEK60.706572303
RBM34MEX3C0.699821303
RBM34FAM200A0.699042303
RBM34RPUSD40.695747403
RBM34MDM20.692611303

For details and further investigation, click here