| Full name: RNA binding motif protein 38 | Alias Symbol: HSRNASEB|SEB4D|seb4B|dJ800J21.2 | ||
| Type: protein-coding gene | Cytoband: 20q13.31 | ||
| Entrez ID: 55544 | HGNC ID: HGNC:15818 | Ensembl Gene: ENSG00000132819 | OMIM ID: 612428 |
| Drug and gene relationship at DGIdb | |||
Screen Evidence:
| |||
Expression of RBM38:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RBM38 | 55544 | 212430_at | 1.3148 | 0.0769 | |
| GSE20347 | RBM38 | 55544 | 212430_at | 0.5478 | 0.0001 | |
| GSE23400 | RBM38 | 55544 | 212430_at | 0.1832 | 0.0674 | |
| GSE26886 | RBM38 | 55544 | 212430_at | 0.7058 | 0.0000 | |
| GSE29001 | RBM38 | 55544 | 212430_at | 0.4772 | 0.0297 | |
| GSE38129 | RBM38 | 55544 | 212430_at | 0.2493 | 0.2621 | |
| GSE45670 | RBM38 | 55544 | 212430_at | 0.1590 | 0.2639 | |
| GSE53622 | RBM38 | 55544 | 7231 | 0.3702 | 0.0257 | |
| GSE53624 | RBM38 | 55544 | 7231 | 0.6987 | 0.0000 | |
| GSE63941 | RBM38 | 55544 | 212430_at | 1.1854 | 0.0236 | |
| GSE77861 | RBM38 | 55544 | 212430_at | 0.6096 | 0.0257 | |
| GSE97050 | RBM38 | 55544 | A_23_P17430 | -0.3218 | 0.5619 | |
| SRP007169 | RBM38 | 55544 | RNAseq | 1.8418 | 0.0004 | |
| SRP008496 | RBM38 | 55544 | RNAseq | 1.9550 | 0.0002 | |
| SRP064894 | RBM38 | 55544 | RNAseq | 0.7369 | 0.0093 | |
| SRP133303 | RBM38 | 55544 | RNAseq | 0.3556 | 0.2190 | |
| SRP159526 | RBM38 | 55544 | RNAseq | 0.7205 | 0.0781 | |
| SRP193095 | RBM38 | 55544 | RNAseq | 0.9751 | 0.0000 | |
| SRP219564 | RBM38 | 55544 | RNAseq | -0.2702 | 0.7117 | |
| TCGA | RBM38 | 55544 | RNAseq | 0.0620 | 0.3830 |
Upregulated datasets: 3; Downregulated datasets: 0.
Survival by RBM38 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of RBM38:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RBM38 | 55544 | 14 | 2 | 14 | |
| GSE20123 | RBM38 | 55544 | 14 | 2 | 14 | |
| GSE43470 | RBM38 | 55544 | 13 | 0 | 30 | |
| GSE46452 | RBM38 | 55544 | 29 | 0 | 30 | |
| GSE47630 | RBM38 | 55544 | 24 | 1 | 15 | |
| GSE54993 | RBM38 | 55544 | 0 | 18 | 52 | |
| GSE54994 | RBM38 | 55544 | 29 | 0 | 24 | |
| GSE60625 | RBM38 | 55544 | 0 | 0 | 11 | |
| GSE74703 | RBM38 | 55544 | 11 | 0 | 25 | |
| GSE74704 | RBM38 | 55544 | 11 | 0 | 9 | |
| TCGA | RBM38 | 55544 | 43 | 4 | 49 |
Total number of gains: 188; Total number of losses: 27; Total Number of normals: 273.
Somatic mutations of RBM38:
Generating mutation plots.
Highly correlated genes for RBM38:
Showing top 20/1255 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RBM38 | SSBP4 | 0.767131 | 4 | 0 | 4 |
| RBM38 | ZNF584 | 0.742113 | 3 | 0 | 3 |
| RBM38 | MRPL9 | 0.740981 | 3 | 0 | 3 |
| RBM38 | NDUFB4 | 0.733166 | 3 | 0 | 3 |
| RBM38 | SLC25A29 | 0.730018 | 3 | 0 | 3 |
| RBM38 | NFATC4 | 0.72812 | 3 | 0 | 3 |
| RBM38 | UTP23 | 0.724055 | 4 | 0 | 3 |
| RBM38 | KRTCAP2 | 0.721679 | 4 | 0 | 4 |
| RBM38 | COL28A1 | 0.716537 | 3 | 0 | 3 |
| RBM38 | MCM3AP | 0.712683 | 3 | 0 | 3 |
| RBM38 | RPL35A | 0.710652 | 3 | 0 | 3 |
| RBM38 | ZNF496 | 0.708839 | 5 | 0 | 4 |
| RBM38 | SYT7 | 0.707529 | 3 | 0 | 3 |
| RBM38 | DDX31 | 0.704732 | 3 | 0 | 3 |
| RBM38 | TEX10 | 0.704315 | 3 | 0 | 3 |
| RBM38 | RNF4 | 0.703661 | 3 | 0 | 3 |
| RBM38 | TMEM63B | 0.703249 | 3 | 0 | 3 |
| RBM38 | C1orf35 | 0.702095 | 4 | 0 | 4 |
| RBM38 | KIAA1257 | 0.699978 | 3 | 0 | 3 |
| RBM38 | SLC7A6OS | 0.699072 | 3 | 0 | 3 |
For details and further investigation, click here
