| Full name: RGPD4 antisense RNA 1 (head to head) | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 2q12.3 | ||
| Entrez ID: 729121 | HGNC ID: HGNC:49273 | Ensembl Gene: ENSG00000230651 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of RGPD4-AS1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RGPD4-AS1 | 729121 | 1558623_at | 0.0704 | 0.7933 | |
| GSE26886 | RGPD4-AS1 | 729121 | 1558623_at | 0.0935 | 0.3199 | |
| GSE45670 | RGPD4-AS1 | 729121 | 1558623_at | -0.0075 | 0.9415 | |
| GSE53622 | RGPD4-AS1 | 729121 | 12855 | 0.0508 | 0.6412 | |
| GSE53624 | RGPD4-AS1 | 729121 | 12855 | 0.2424 | 0.0006 | |
| GSE63941 | RGPD4-AS1 | 729121 | 1558623_at | 0.1976 | 0.0789 | |
| GSE77861 | RGPD4-AS1 | 729121 | 1558623_at | -0.0358 | 0.7614 | |
| SRP133303 | RGPD4-AS1 | 729121 | RNAseq | 1.1476 | 0.0020 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by RGPD4-AS1 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of RGPD4-AS1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RGPD4-AS1 | 729121 | 3 | 2 | 25 | |
| GSE20123 | RGPD4-AS1 | 729121 | 3 | 2 | 25 | |
| GSE43470 | RGPD4-AS1 | 729121 | 3 | 1 | 39 | |
| GSE46452 | RGPD4-AS1 | 729121 | 1 | 4 | 54 | |
| GSE47630 | RGPD4-AS1 | 729121 | 7 | 0 | 33 | |
| GSE54993 | RGPD4-AS1 | 729121 | 0 | 6 | 64 | |
| GSE54994 | RGPD4-AS1 | 729121 | 10 | 0 | 43 | |
| GSE60625 | RGPD4-AS1 | 729121 | 0 | 3 | 8 | |
| GSE74703 | RGPD4-AS1 | 729121 | 3 | 1 | 32 | |
| GSE74704 | RGPD4-AS1 | 729121 | 2 | 2 | 16 |
Total number of gains: 32; Total number of losses: 21; Total Number of normals: 339.
Somatic mutations of RGPD4-AS1:
Generating mutation plots.
Highly correlated genes for RGPD4-AS1:
Showing top 20/21 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RGPD4-AS1 | PCAT4 | 0.660843 | 3 | 0 | 3 |
| RGPD4-AS1 | KDM6B | 0.613565 | 3 | 0 | 3 |
| RGPD4-AS1 | LINC00205 | 0.605081 | 3 | 0 | 3 |
| RGPD4-AS1 | CELF3 | 0.583486 | 5 | 0 | 3 |
| RGPD4-AS1 | SEC14L3 | 0.58159 | 3 | 0 | 3 |
| RGPD4-AS1 | C7orf61 | 0.565458 | 4 | 0 | 4 |
| RGPD4-AS1 | P2RX6 | 0.563338 | 3 | 0 | 3 |
| RGPD4-AS1 | RBFOX1 | 0.556703 | 5 | 0 | 3 |
| RGPD4-AS1 | OR4D1 | 0.550125 | 3 | 0 | 3 |
| RGPD4-AS1 | FGFR4 | 0.545033 | 4 | 0 | 3 |
| RGPD4-AS1 | UPB1 | 0.540716 | 3 | 0 | 3 |
| RGPD4-AS1 | GPR26 | 0.536514 | 4 | 0 | 3 |
| RGPD4-AS1 | EXOC3L1 | 0.534819 | 3 | 0 | 3 |
| RGPD4-AS1 | SPATA24 | 0.527715 | 4 | 0 | 3 |
| RGPD4-AS1 | NFAM1 | 0.526444 | 4 | 0 | 3 |
| RGPD4-AS1 | DRP2 | 0.524097 | 3 | 0 | 3 |
| RGPD4-AS1 | HAUS5 | 0.517244 | 4 | 0 | 3 |
| RGPD4-AS1 | DLGAP3 | 0.511615 | 4 | 0 | 3 |
| RGPD4-AS1 | CABP4 | 0.510348 | 5 | 0 | 3 |
| RGPD4-AS1 | HTR5A | 0.507217 | 4 | 0 | 3 |
For details and further investigation, click here
