| Full name: prostate cancer associated transcript 4 | Alias Symbol: GDEP|PCAN1|PCA4 | ||
| Type: non-coding RNA | Cytoband: 4q21.21 | ||
| Entrez ID: 118425 | HGNC ID: HGNC:24853 | Ensembl Gene: ENSG00000251321 | OMIM ID: 609717 |
| Drug and gene relationship at DGIdb | |||
Expression of PCAT4:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | PCAT4 | 118425 | 1554591_at | -0.0594 | 0.8592 | |
| GSE26886 | PCAT4 | 118425 | 1554591_at | -0.3158 | 0.0035 | |
| GSE45670 | PCAT4 | 118425 | 1554591_at | 0.1181 | 0.3406 | |
| GSE53622 | PCAT4 | 118425 | 34695 | -0.1727 | 0.1322 | |
| GSE53624 | PCAT4 | 118425 | 34695 | -0.0414 | 0.7952 | |
| GSE63941 | PCAT4 | 118425 | 1554591_at | -0.0282 | 0.8794 | |
| GSE77861 | PCAT4 | 118425 | 1554591_at | -0.1599 | 0.2843 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by PCAT4 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of PCAT4:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | PCAT4 | 118425 | 0 | 10 | 20 | |
| GSE20123 | PCAT4 | 118425 | 1 | 10 | 19 | |
| GSE43470 | PCAT4 | 118425 | 0 | 13 | 30 | |
| GSE46452 | PCAT4 | 118425 | 1 | 36 | 22 | |
| GSE47630 | PCAT4 | 118425 | 1 | 19 | 20 | |
| GSE54993 | PCAT4 | 118425 | 8 | 0 | 62 | |
| GSE54994 | PCAT4 | 118425 | 0 | 9 | 44 | |
| GSE60625 | PCAT4 | 118425 | 0 | 0 | 11 | |
| GSE74703 | PCAT4 | 118425 | 0 | 11 | 25 | |
| GSE74704 | PCAT4 | 118425 | 1 | 5 | 14 | |
| TCGA | PCAT4 | 118425 | 11 | 34 | 51 |
Total number of gains: 23; Total number of losses: 147; Total Number of normals: 318.
Somatic mutations of PCAT4:
Generating mutation plots.
Highly correlated genes for PCAT4:
Showing top 20/49 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| PCAT4 | CCDC184 | 0.698607 | 3 | 0 | 3 |
| PCAT4 | IL5 | 0.697378 | 3 | 0 | 3 |
| PCAT4 | KCNJ5 | 0.696973 | 3 | 0 | 3 |
| PCAT4 | SLITRK2 | 0.674044 | 3 | 0 | 3 |
| PCAT4 | ARHGEF7-IT1 | 0.672823 | 3 | 0 | 3 |
| PCAT4 | C2orf16 | 0.663587 | 3 | 0 | 3 |
| PCAT4 | RGPD4-AS1 | 0.660843 | 3 | 0 | 3 |
| PCAT4 | KLK3 | 0.660311 | 3 | 0 | 3 |
| PCAT4 | F9 | 0.647482 | 3 | 0 | 3 |
| PCAT4 | XIST | 0.640062 | 3 | 0 | 3 |
| PCAT4 | RNF157 | 0.637453 | 5 | 0 | 4 |
| PCAT4 | KLHL34 | 0.63427 | 3 | 0 | 3 |
| PCAT4 | AKR1E2 | 0.632741 | 3 | 0 | 3 |
| PCAT4 | FSCB | 0.623404 | 4 | 0 | 3 |
| PCAT4 | TAL2 | 0.614477 | 3 | 0 | 3 |
| PCAT4 | RNF208 | 0.613227 | 4 | 0 | 3 |
| PCAT4 | SMR3B | 0.612938 | 3 | 0 | 3 |
| PCAT4 | SRRM4 | 0.61253 | 4 | 0 | 4 |
| PCAT4 | IFNA4 | 0.61155 | 3 | 0 | 3 |
| PCAT4 | TMPRSS15 | 0.603942 | 4 | 0 | 3 |
For details and further investigation, click here
