| Full name: sushi, nidogen and EGF like domains 1 | Alias Symbol: FLJ00133|SST3|Snep | ||
| Type: protein-coding gene | Cytoband: 2q37.3 | ||
| Entrez ID: 25992 | HGNC ID: HGNC:24696 | Ensembl Gene: ENSG00000162804 | OMIM ID: 616634 |
| Drug and gene relationship at DGIdb | |||
Expression of SNED1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SNED1 | 25992 | 213488_at | -0.6884 | 0.1411 | |
| GSE20347 | SNED1 | 25992 | 213488_at | -0.0665 | 0.4655 | |
| GSE23400 | SNED1 | 25992 | 213488_at | -0.1289 | 0.0096 | |
| GSE26886 | SNED1 | 25992 | 1559421_at | 0.0773 | 0.7047 | |
| GSE29001 | SNED1 | 25992 | 213488_at | -0.2373 | 0.2299 | |
| GSE38129 | SNED1 | 25992 | 213488_at | -0.1008 | 0.5605 | |
| GSE45670 | SNED1 | 25992 | 213488_at | -0.8537 | 0.0001 | |
| GSE53622 | SNED1 | 25992 | 69857 | 0.2181 | 0.0004 | |
| GSE53624 | SNED1 | 25992 | 69857 | 0.1037 | 0.2234 | |
| GSE63941 | SNED1 | 25992 | 213488_at | -1.6720 | 0.0000 | |
| GSE77861 | SNED1 | 25992 | 213488_at | 0.1498 | 0.4463 | |
| GSE97050 | SNED1 | 25992 | A_33_P3263497 | 0.0447 | 0.8454 | |
| SRP007169 | SNED1 | 25992 | RNAseq | 0.0134 | 0.9835 | |
| SRP064894 | SNED1 | 25992 | RNAseq | -0.4325 | 0.2435 | |
| SRP133303 | SNED1 | 25992 | RNAseq | -0.7254 | 0.0005 | |
| SRP193095 | SNED1 | 25992 | RNAseq | -0.4406 | 0.0200 | |
| SRP219564 | SNED1 | 25992 | RNAseq | -0.1798 | 0.6805 | |
| TCGA | SNED1 | 25992 | RNAseq | -0.6387 | 0.0000 |
Upregulated datasets: 0; Downregulated datasets: 1.
Survival by SNED1 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of SNED1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SNED1 | 25992 | 1 | 12 | 17 | |
| GSE20123 | SNED1 | 25992 | 1 | 12 | 17 | |
| GSE43470 | SNED1 | 25992 | 1 | 9 | 33 | |
| GSE46452 | SNED1 | 25992 | 0 | 5 | 54 | |
| GSE47630 | SNED1 | 25992 | 4 | 5 | 31 | |
| GSE54993 | SNED1 | 25992 | 4 | 3 | 63 | |
| GSE54994 | SNED1 | 25992 | 8 | 9 | 36 | |
| GSE60625 | SNED1 | 25992 | 0 | 3 | 8 | |
| GSE74703 | SNED1 | 25992 | 1 | 7 | 28 | |
| GSE74704 | SNED1 | 25992 | 1 | 5 | 14 | |
| TCGA | SNED1 | 25992 | 12 | 28 | 56 |
Total number of gains: 33; Total number of losses: 98; Total Number of normals: 357.
Somatic mutations of SNED1:
Generating mutation plots.
Highly correlated genes for SNED1:
Showing top 20/341 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SNED1 | OR5A1 | 0.837375 | 3 | 0 | 3 |
| SNED1 | DCDC1 | 0.819509 | 3 | 0 | 3 |
| SNED1 | OR2T1 | 0.811089 | 3 | 0 | 3 |
| SNED1 | YY2 | 0.808761 | 3 | 0 | 3 |
| SNED1 | STRC | 0.804175 | 3 | 0 | 3 |
| SNED1 | MRGPRG | 0.801607 | 3 | 0 | 3 |
| SNED1 | PSMB11 | 0.796894 | 3 | 0 | 3 |
| SNED1 | CELF5 | 0.793043 | 3 | 0 | 3 |
| SNED1 | PLA2G2C | 0.789945 | 3 | 0 | 3 |
| SNED1 | OR2T27 | 0.785404 | 3 | 0 | 3 |
| SNED1 | GRIK4 | 0.781329 | 3 | 0 | 3 |
| SNED1 | GHRHR | 0.779884 | 3 | 0 | 3 |
| SNED1 | TCTE1 | 0.770876 | 3 | 0 | 3 |
| SNED1 | C9orf106 | 0.770239 | 3 | 0 | 3 |
| SNED1 | LINC01279 | 0.769784 | 3 | 0 | 3 |
| SNED1 | OR2A5 | 0.76879 | 3 | 0 | 3 |
| SNED1 | C1QL2 | 0.768691 | 3 | 0 | 3 |
| SNED1 | FSIP1 | 0.766027 | 3 | 0 | 3 |
| SNED1 | INSC | 0.764757 | 3 | 0 | 3 |
| SNED1 | C2CD4D | 0.762701 | 3 | 0 | 3 |
For details and further investigation, click here
