CD70

 

Full name: CD70 molecule Alias Symbol: CD27L
Type: protein-coding gene Cytoband: 19p13.3
Entrez ID: 970 HGNC ID: HGNC:11937 Ensembl Gene:  OMIM ID: 602840
Drug and gene relationship at DGIdb
Screen Evidence:
  • This gene has been idenfitied as a common driver in this paper.
  • Knocking out of this gene by CRIPR/Cas9 screen found altered tolerance on DNA toxicity in Genotoxic Screens.

 

Expression of CD70:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 CD70 970 206508_at 0.2888 0.2968
GSE20347 CD70 970 206508_at 0.1818 0.2656
GSE23400 CD70 970 206508_at 0.1107 0.1332
GSE26886 CD70 970 206508_at 0.2064 0.0327
GSE29001 CD70 970 206508_at 0.0749 0.6610
GSE38129 CD70 970 206508_at 0.2147 0.1911
GSE45670 CD70 970 206508_at 0.1557 0.4884
GSE63941 CD70 970 206508_at 0.9108 0.1162
GSE77861 CD70 970 206508_at -0.0441 0.7179
GSE97050 CD70 970 A_33_P3243449 -0.1605 0.7085
SRP007169 CD70 970 RNAseq 1.0795 0.1010
SRP064894 CD70 970 RNAseq 0.3742 0.1187
SRP133303 CD70 970 RNAseq 0.2112 0.0833
SRP193095 CD70 970 RNAseq 0.4337 0.0051
SRP219564 CD70 970 RNAseq 2.2095 0.0029
TCGA CD70 970 RNAseq 1.6977 0.0000

Upregulated datasets: 2; Downregulated datasets: 0.  


 

Survival by CD70 expression:

 

TCGA

 

Note: Click image to view full size file.  


Copy number change of CD70:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 CD70 970 5 3 22
GSE20123 CD70 970 4 2 24
GSE43470 CD70 970 2 6 35
GSE46452 CD70 970 47 1 11
GSE47630 CD70 970 5 7 28
GSE54993 CD70 970 16 3 51
GSE54994 CD70 970 6 14 33
GSE60625 CD70 970 9 0 2
GSE74703 CD70 970 2 4 30
GSE74704 CD70 970 1 2 17
TCGA CD70 970 9 19 68

Total number of gains: 106; Total number of losses: 61; Total Number of normals: 321.  


 

Somatic mutations of CD70:

 

Generating mutation plots.

 

Highly correlated genes for CD70:

 

Showing top 20/261 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
CD70ADCK50.738669303
CD70CELF40.733389303
CD70C16orf950.730115303
CD70G6PD0.712841303
CD70RIMS40.709655404
CD70C7orf610.705195303
CD70BEST30.704619303
CD70GMIP0.702084303
CD70IGSF9B0.686879303
CD70ZNF5240.684245303
CD70FBLL10.682108303
CD70INF20.680165505
CD70BRF10.679126404
CD70CA60.677632303
CD70UPB10.676268403
CD70DOHH0.67312403
CD70SLC35F30.672902303
CD70CABP10.671747303
CD70CDH40.669572404
CD70GABRD0.668158404

For details and further investigation, click here