| Full name: collagen type XVI alpha 1 chain | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 1p35.2 | ||
| Entrez ID: 1307 | HGNC ID: HGNC:2193 | Ensembl Gene: ENSG00000084636 | OMIM ID: 120326 |
| Drug and gene relationship at DGIdb | |||
Expression of COL16A1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | COL16A1 | 1307 | 204345_at | 0.7643 | 0.4989 | |
| GSE20347 | COL16A1 | 1307 | 204345_at | 0.6660 | 0.0065 | |
| GSE23400 | COL16A1 | 1307 | 204345_at | 0.6054 | 0.0001 | |
| GSE26886 | COL16A1 | 1307 | 204345_at | 2.1392 | 0.0000 | |
| GSE29001 | COL16A1 | 1307 | 204345_at | 1.2967 | 0.0030 | |
| GSE38129 | COL16A1 | 1307 | 204345_at | 0.5825 | 0.0145 | |
| GSE45670 | COL16A1 | 1307 | 204345_at | -0.0169 | 0.9773 | |
| GSE53622 | COL16A1 | 1307 | 52236 | 0.7185 | 0.0000 | |
| GSE53624 | COL16A1 | 1307 | 19259 | 1.1028 | 0.0000 | |
| GSE63941 | COL16A1 | 1307 | 204345_at | -3.2585 | 0.0001 | |
| GSE77861 | COL16A1 | 1307 | 204345_at | 0.7808 | 0.0277 | |
| GSE97050 | COL16A1 | 1307 | A_33_P3210647 | 0.2059 | 0.4816 | |
| SRP007169 | COL16A1 | 1307 | RNAseq | 2.4450 | 0.0000 | |
| SRP008496 | COL16A1 | 1307 | RNAseq | 2.6757 | 0.0000 | |
| SRP064894 | COL16A1 | 1307 | RNAseq | 1.0619 | 0.0000 | |
| SRP133303 | COL16A1 | 1307 | RNAseq | 1.0214 | 0.0051 | |
| SRP159526 | COL16A1 | 1307 | RNAseq | 0.6732 | 0.2792 | |
| SRP193095 | COL16A1 | 1307 | RNAseq | 1.7726 | 0.0000 | |
| SRP219564 | COL16A1 | 1307 | RNAseq | 0.1985 | 0.6491 | |
| TCGA | COL16A1 | 1307 | RNAseq | 0.1501 | 0.2005 |
Upregulated datasets: 8; Downregulated datasets: 1.
Survival by COL16A1 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of COL16A1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | COL16A1 | 1307 | 1 | 5 | 24 | |
| GSE20123 | COL16A1 | 1307 | 1 | 4 | 25 | |
| GSE43470 | COL16A1 | 1307 | 6 | 4 | 33 | |
| GSE46452 | COL16A1 | 1307 | 5 | 1 | 53 | |
| GSE47630 | COL16A1 | 1307 | 8 | 3 | 29 | |
| GSE54993 | COL16A1 | 1307 | 1 | 1 | 68 | |
| GSE54994 | COL16A1 | 1307 | 11 | 2 | 40 | |
| GSE60625 | COL16A1 | 1307 | 0 | 0 | 11 | |
| GSE74703 | COL16A1 | 1307 | 4 | 3 | 29 | |
| GSE74704 | COL16A1 | 1307 | 0 | 0 | 20 | |
| TCGA | COL16A1 | 1307 | 13 | 19 | 64 |
Total number of gains: 50; Total number of losses: 42; Total Number of normals: 396.
Somatic mutations of COL16A1:
Generating mutation plots.
Highly correlated genes for COL16A1:
Showing top 20/355 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| COL16A1 | C19orf44 | 0.78031 | 3 | 0 | 3 |
| COL16A1 | TCEAL7 | 0.761735 | 3 | 0 | 3 |
| COL16A1 | TRIM46 | 0.759234 | 4 | 0 | 4 |
| COL16A1 | PNMA6A | 0.759065 | 3 | 0 | 3 |
| COL16A1 | FOXA3 | 0.75369 | 3 | 0 | 3 |
| COL16A1 | JSRP1 | 0.749997 | 3 | 0 | 3 |
| COL16A1 | ELOVL3 | 0.738006 | 3 | 0 | 3 |
| COL16A1 | FAM181A | 0.726955 | 3 | 0 | 3 |
| COL16A1 | ZNF511 | 0.725304 | 3 | 0 | 3 |
| COL16A1 | CCDC142 | 0.708957 | 4 | 0 | 3 |
| COL16A1 | PMEPA1 | 0.702235 | 12 | 0 | 11 |
| COL16A1 | CDH4 | 0.697973 | 3 | 0 | 3 |
| COL16A1 | JAKMIP3 | 0.686708 | 3 | 0 | 3 |
| COL16A1 | COL27A1 | 0.684872 | 8 | 0 | 6 |
| COL16A1 | HSPB3 | 0.681523 | 3 | 0 | 3 |
| COL16A1 | ZSCAN5A | 0.678825 | 3 | 0 | 3 |
| COL16A1 | USP51 | 0.677287 | 4 | 0 | 3 |
| COL16A1 | DAB1 | 0.674512 | 4 | 0 | 3 |
| COL16A1 | CDC42EP2 | 0.674397 | 3 | 0 | 3 |
| COL16A1 | BGN | 0.671673 | 12 | 0 | 11 |
For details and further investigation, click here
