| Full name: hepatocellular carcinoma associated transcript 5 | Alias Symbol: HTA|FJ222407 | ||
| Type: non-coding RNA | Cytoband: 16q22.3 | ||
| Entrez ID: 283902 | HGNC ID: HGNC:48612 | Ensembl Gene: ENSG00000260880 | OMIM ID: 615613 |
| Drug and gene relationship at DGIdb | |||
Expression of HCCAT5:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | HCCAT5 | 283902 | 1570315_at | -0.0015 | 0.9966 | |
| GSE26886 | HCCAT5 | 283902 | 1570315_at | 0.0232 | 0.8718 | |
| GSE45670 | HCCAT5 | 283902 | 1570315_at | 0.1040 | 0.2397 | |
| GSE53622 | HCCAT5 | 283902 | 37679 | 0.4364 | 0.0002 | |
| GSE53624 | HCCAT5 | 283902 | 37679 | 0.6501 | 0.0013 | |
| GSE63941 | HCCAT5 | 283902 | 1570315_at | 0.1322 | 0.4050 | |
| GSE77861 | HCCAT5 | 283902 | 1570315_at | -0.0098 | 0.9399 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by HCCAT5 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of HCCAT5:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | HCCAT5 | 283902 | 4 | 0 | 26 | |
| GSE20123 | HCCAT5 | 283902 | 4 | 0 | 26 | |
| GSE43470 | HCCAT5 | 283902 | 2 | 8 | 33 | |
| GSE46452 | HCCAT5 | 283902 | 38 | 2 | 19 | |
| GSE47630 | HCCAT5 | 283902 | 11 | 8 | 21 | |
| GSE54993 | HCCAT5 | 283902 | 2 | 4 | 64 | |
| GSE54994 | HCCAT5 | 283902 | 8 | 10 | 35 | |
| GSE60625 | HCCAT5 | 283902 | 4 | 0 | 7 | |
| GSE74703 | HCCAT5 | 283902 | 2 | 5 | 29 | |
| GSE74704 | HCCAT5 | 283902 | 2 | 0 | 18 | |
| TCGA | HCCAT5 | 283902 | 27 | 15 | 54 |
Total number of gains: 104; Total number of losses: 52; Total Number of normals: 332.
Somatic mutations of HCCAT5:
Generating mutation plots.
Highly correlated genes for HCCAT5:
Showing top 20/87 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| HCCAT5 | ASB16 | 0.705372 | 3 | 0 | 3 |
| HCCAT5 | OSM | 0.641 | 3 | 0 | 3 |
| HCCAT5 | P2RX3 | 0.637531 | 3 | 0 | 3 |
| HCCAT5 | SLC5A2 | 0.631898 | 3 | 0 | 3 |
| HCCAT5 | MYOG | 0.627612 | 3 | 0 | 3 |
| HCCAT5 | WDR64 | 0.624167 | 3 | 0 | 3 |
| HCCAT5 | ZP4 | 0.621034 | 3 | 0 | 3 |
| HCCAT5 | CUX2 | 0.618096 | 3 | 0 | 3 |
| HCCAT5 | AATK | 0.616254 | 3 | 0 | 3 |
| HCCAT5 | LUZP2 | 0.615187 | 3 | 0 | 3 |
| HCCAT5 | CAMK2B | 0.611521 | 4 | 0 | 3 |
| HCCAT5 | FBXL18 | 0.60939 | 3 | 0 | 3 |
| HCCAT5 | MAP3K10 | 0.604708 | 3 | 0 | 3 |
| HCCAT5 | NALCN-AS1 | 0.604023 | 3 | 0 | 3 |
| HCCAT5 | LINC00574 | 0.603682 | 3 | 0 | 3 |
| HCCAT5 | SLC39A5 | 0.603418 | 6 | 0 | 4 |
| HCCAT5 | SLC4A1 | 0.601273 | 5 | 0 | 3 |
| HCCAT5 | ASCL5 | 0.596246 | 3 | 0 | 3 |
| HCCAT5 | PCBP3 | 0.594851 | 3 | 0 | 3 |
| HCCAT5 | LINC01121 | 0.59203 | 5 | 0 | 4 |
For details and further investigation, click here
