| Full name: intraflagellar transport 20 | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 17q11.2 | ||
| Entrez ID: 90410 | HGNC ID: HGNC:30989 | Ensembl Gene: ENSG00000109083 | OMIM ID: 614394 |
| Drug and gene relationship at DGIdb | |||
Expression of IFT20:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | IFT20 | 90410 | 210312_s_at | 0.2948 | 0.4865 | |
| GSE20347 | IFT20 | 90410 | 210312_s_at | 0.3367 | 0.0080 | |
| GSE23400 | IFT20 | 90410 | 210312_s_at | 0.3781 | 0.0000 | |
| GSE26886 | IFT20 | 90410 | 210312_s_at | 1.0975 | 0.0000 | |
| GSE29001 | IFT20 | 90410 | 210312_s_at | 0.1575 | 0.5335 | |
| GSE38129 | IFT20 | 90410 | 210312_s_at | 0.3142 | 0.0168 | |
| GSE45670 | IFT20 | 90410 | 210312_s_at | 0.2123 | 0.2308 | |
| GSE53622 | IFT20 | 90410 | 48334 | 0.4000 | 0.0000 | |
| GSE53624 | IFT20 | 90410 | 48334 | 0.4096 | 0.0000 | |
| GSE63941 | IFT20 | 90410 | 210312_s_at | -0.5496 | 0.1331 | |
| GSE77861 | IFT20 | 90410 | 210312_s_at | 0.6847 | 0.0162 | |
| GSE97050 | IFT20 | 90410 | A_23_P130089 | 0.2236 | 0.2878 | |
| SRP007169 | IFT20 | 90410 | RNAseq | 0.4960 | 0.2108 | |
| SRP008496 | IFT20 | 90410 | RNAseq | 0.3758 | 0.1613 | |
| SRP064894 | IFT20 | 90410 | RNAseq | 0.4664 | 0.0359 | |
| SRP133303 | IFT20 | 90410 | RNAseq | 0.4325 | 0.0008 | |
| SRP159526 | IFT20 | 90410 | RNAseq | 0.3795 | 0.0978 | |
| SRP193095 | IFT20 | 90410 | RNAseq | 0.0254 | 0.8626 | |
| SRP219564 | IFT20 | 90410 | RNAseq | -0.1787 | 0.6332 | |
| TCGA | IFT20 | 90410 | RNAseq | -0.2019 | 0.0010 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by IFT20 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of IFT20:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | IFT20 | 90410 | 9 | 1 | 20 | |
| GSE20123 | IFT20 | 90410 | 9 | 1 | 20 | |
| GSE43470 | IFT20 | 90410 | 0 | 1 | 42 | |
| GSE46452 | IFT20 | 90410 | 33 | 1 | 25 | |
| GSE47630 | IFT20 | 90410 | 7 | 1 | 32 | |
| GSE54993 | IFT20 | 90410 | 2 | 3 | 65 | |
| GSE54994 | IFT20 | 90410 | 7 | 6 | 40 | |
| GSE60625 | IFT20 | 90410 | 4 | 0 | 7 | |
| GSE74703 | IFT20 | 90410 | 0 | 1 | 35 | |
| GSE74704 | IFT20 | 90410 | 7 | 1 | 12 | |
| TCGA | IFT20 | 90410 | 21 | 10 | 65 |
Total number of gains: 99; Total number of losses: 26; Total Number of normals: 363.
Somatic mutations of IFT20:
Generating mutation plots.
Highly correlated genes for IFT20:
Showing top 20/1134 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| IFT20 | ZNF766 | 0.815618 | 3 | 0 | 3 |
| IFT20 | ZNF260 | 0.801489 | 3 | 0 | 3 |
| IFT20 | LRRC34 | 0.792723 | 3 | 0 | 3 |
| IFT20 | WDR81 | 0.784671 | 5 | 0 | 5 |
| IFT20 | ZNF628 | 0.771118 | 3 | 0 | 3 |
| IFT20 | ZNF358 | 0.760082 | 3 | 0 | 3 |
| IFT20 | RPGR | 0.754554 | 3 | 0 | 3 |
| IFT20 | ATF1 | 0.746951 | 3 | 0 | 3 |
| IFT20 | SGTB | 0.744539 | 3 | 0 | 3 |
| IFT20 | ALKBH6 | 0.743548 | 4 | 0 | 3 |
| IFT20 | UQCR11 | 0.741248 | 3 | 0 | 3 |
| IFT20 | DHRS13 | 0.73169 | 4 | 0 | 4 |
| IFT20 | SLC39A3 | 0.729393 | 4 | 0 | 4 |
| IFT20 | LTBR | 0.728534 | 4 | 0 | 3 |
| IFT20 | ZNF124 | 0.727706 | 4 | 0 | 4 |
| IFT20 | PIGS | 0.726896 | 4 | 0 | 3 |
| IFT20 | NACC1 | 0.725986 | 3 | 0 | 3 |
| IFT20 | PIGM | 0.717381 | 3 | 0 | 3 |
| IFT20 | LRP4 | 0.715553 | 4 | 0 | 3 |
| IFT20 | CRTC2 | 0.715394 | 4 | 0 | 4 |
For details and further investigation, click here
