| Full name: small glutamine rich tetratricopeptide repeat containing beta | Alias Symbol: Sgt2|FLJ39002 | ||
| Type: protein-coding gene | Cytoband: 5q12.3 | ||
| Entrez ID: 54557 | HGNC ID: HGNC:23567 | Ensembl Gene: ENSG00000197860 | OMIM ID: |
Expression of SGTB:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SGTB | 54557 | 228745_at | -0.0412 | 0.9752 | |
| GSE26886 | SGTB | 54557 | 228745_at | 1.0189 | 0.0017 | |
| GSE45670 | SGTB | 54557 | 228745_at | -0.5522 | 0.0217 | |
| GSE63941 | SGTB | 54557 | 228745_at | -2.2686 | 0.0083 | |
| GSE77861 | SGTB | 54557 | 228745_at | 0.2521 | 0.0669 | |
| GSE97050 | SGTB | 54557 | A_33_P3371089 | -0.3187 | 0.3646 | |
| SRP007169 | SGTB | 54557 | RNAseq | 1.5451 | 0.0001 | |
| SRP008496 | SGTB | 54557 | RNAseq | 1.2685 | 0.0000 | |
| SRP064894 | SGTB | 54557 | RNAseq | 0.7101 | 0.0038 | |
| SRP133303 | SGTB | 54557 | RNAseq | 0.5902 | 0.0013 | |
| SRP159526 | SGTB | 54557 | RNAseq | 0.2699 | 0.2479 | |
| SRP193095 | SGTB | 54557 | RNAseq | 0.5745 | 0.0000 | |
| SRP219564 | SGTB | 54557 | RNAseq | 0.0211 | 0.9599 | |
| TCGA | SGTB | 54557 | RNAseq | 0.0092 | 0.9082 |
Upregulated datasets: 3; Downregulated datasets: 1.
Survival by SGTB expression:
 |
| TCGA |
Note: Click image to view full size file.
Copy number change of SGTB:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SGTB | 54557 | 0 | 13 | 17 | |
| GSE20123 | SGTB | 54557 | 0 | 13 | 17 | |
| GSE43470 | SGTB | 54557 | 1 | 13 | 29 | |
| GSE46452 | SGTB | 54557 | 0 | 28 | 31 | |
| GSE47630 | SGTB | 54557 | 2 | 17 | 21 | |
| GSE54993 | SGTB | 54557 | 8 | 1 | 61 | |
| GSE54994 | SGTB | 54557 | 1 | 19 | 33 | |
| GSE60625 | SGTB | 54557 | 0 | 0 | 11 | |
| GSE74703 | SGTB | 54557 | 1 | 9 | 26 | |
| GSE74704 | SGTB | 54557 | 0 | 6 | 14 | |
| TCGA | SGTB | 54557 | 3 | 50 | 43 |
Total number of gains: 16; Total number of losses: 169; Total Number of normals: 303.
Somatic mutations of SGTB:
Generating mutation plots.
Highly correlated genes for SGTB:
Showing top 20/1004 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SGTB | DGKH | 0.875148 | 3 | 0 | 3 |
| SGTB | CEP290 | 0.826551 | 3 | 0 | 3 |
| SGTB | ARSB | 0.810653 | 4 | 0 | 4 |
| SGTB | TNFAIP1 | 0.808272 | 3 | 0 | 3 |
| SGTB | CLIP2 | 0.804576 | 3 | 0 | 3 |
| SGTB | TLK1 | 0.802063 | 4 | 0 | 4 |
| SGTB | NENF | 0.799247 | 3 | 0 | 3 |
| SGTB | SEC22C | 0.799168 | 6 | 0 | 6 |
| SGTB | PCDH18 | 0.797402 | 4 | 0 | 4 |
| SGTB | GNB5 | 0.787189 | 4 | 0 | 4 |
| SGTB | NEDD1 | 0.786731 | 3 | 0 | 3 |
| SGTB | GLT8D2 | 0.786667 | 4 | 0 | 4 |
| SGTB | TLE1 | 0.782817 | 3 | 0 | 3 |
| SGTB | ADAM23 | 0.782779 | 3 | 0 | 3 |
| SGTB | SYTL2 | 0.777373 | 3 | 0 | 3 |
| SGTB | THAP10 | 0.774984 | 3 | 0 | 3 |
| SGTB | NOL9 | 0.774892 | 3 | 0 | 3 |
| SGTB | FZD4 | 0.771832 | 3 | 0 | 3 |
| SGTB | KBTBD6 | 0.770431 | 3 | 0 | 3 |
| SGTB | AHCTF1 | 0.769438 | 3 | 0 | 3 |
For details and further investigation, click here
