| Full name: long intergenic non-protein coding RNA 271 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 6q23.3 | ||
| Entrez ID: 100131814 | HGNC ID: HGNC:32526 | Ensembl Gene: ENSG00000231028 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00271:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00271 | 100131814 | 1561106_at | -0.0757 | 0.7221 | |
| GSE26886 | LINC00271 | 100131814 | 1561106_at | 0.0071 | 0.9546 | |
| GSE45670 | LINC00271 | 100131814 | 1561106_at | -0.1243 | 0.1664 | |
| GSE53622 | LINC00271 | 100131814 | 120457 | 0.1684 | 0.0751 | |
| GSE53624 | LINC00271 | 100131814 | 73713 | 0.2052 | 0.0752 | |
| GSE63941 | LINC00271 | 100131814 | 1561106_at | -0.0675 | 0.7219 | |
| GSE77861 | LINC00271 | 100131814 | 1561106_at | -0.0754 | 0.3708 | |
| SRP133303 | LINC00271 | 100131814 | RNAseq | -0.4833 | 0.1558 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00271 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00271:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00271 | 100131814 | 4 | 4 | 22 | |
| GSE20123 | LINC00271 | 100131814 | 4 | 3 | 23 | |
| GSE43470 | LINC00271 | 100131814 | 5 | 0 | 38 | |
| GSE46452 | LINC00271 | 100131814 | 3 | 10 | 46 | |
| GSE47630 | LINC00271 | 100131814 | 10 | 4 | 26 | |
| GSE54993 | LINC00271 | 100131814 | 3 | 2 | 65 | |
| GSE54994 | LINC00271 | 100131814 | 9 | 7 | 37 | |
| GSE60625 | LINC00271 | 100131814 | 0 | 1 | 10 | |
| GSE74703 | LINC00271 | 100131814 | 4 | 0 | 32 | |
| GSE74704 | LINC00271 | 100131814 | 2 | 1 | 17 | |
| TCGA | LINC00271 | 100131814 | 13 | 17 | 66 |
Total number of gains: 57; Total number of losses: 49; Total Number of normals: 382.
Somatic mutations of LINC00271:
Generating mutation plots.
Highly correlated genes for LINC00271:
Showing top 20/78 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00271 | CELA3A | 0.74817 | 3 | 0 | 3 |
| LINC00271 | FAM205A | 0.737684 | 3 | 0 | 3 |
| LINC00271 | ZNF763 | 0.73255 | 3 | 0 | 3 |
| LINC00271 | DSCAM-AS1 | 0.730792 | 3 | 0 | 3 |
| LINC00271 | GJD4 | 0.710983 | 3 | 0 | 3 |
| LINC00271 | SIM1 | 0.701473 | 3 | 0 | 3 |
| LINC00271 | SLC44A4 | 0.700988 | 3 | 0 | 3 |
| LINC00271 | LINC00917 | 0.695985 | 4 | 0 | 4 |
| LINC00271 | ST8SIA3 | 0.692779 | 3 | 0 | 3 |
| LINC00271 | CCDC154 | 0.69132 | 3 | 0 | 3 |
| LINC00271 | ZNF589 | 0.690131 | 3 | 0 | 3 |
| LINC00271 | KRTAP4-8 | 0.687362 | 3 | 0 | 3 |
| LINC00271 | HGFAC | 0.673701 | 3 | 0 | 3 |
| LINC00271 | WDR87 | 0.667434 | 4 | 0 | 3 |
| LINC00271 | LAT2 | 0.666541 | 3 | 0 | 3 |
| LINC00271 | OR11A1 | 0.663993 | 3 | 0 | 3 |
| LINC00271 | TOR2A | 0.659977 | 3 | 0 | 3 |
| LINC00271 | TMEM235 | 0.654447 | 3 | 0 | 3 |
| LINC00271 | OPRL1 | 0.650427 | 3 | 0 | 3 |
| LINC00271 | LRRC3 | 0.647041 | 3 | 0 | 3 |
For details and further investigation, click here
