| Full name: long intergenic non-protein coding RNA 317 | Alias Symbol: PRED89 | ||
| Type: non-coding RNA | Cytoband: 21q21.1 | ||
| Entrez ID: 378828 | HGNC ID: HGNC:23126 | Ensembl Gene: ENSG00000238265 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00317:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00317 | 378828 | 1554983_at | -0.1441 | 0.5509 | |
| GSE26886 | LINC00317 | 378828 | 1554983_at | -0.2508 | 0.0163 | |
| GSE45670 | LINC00317 | 378828 | 1554983_at | -0.0670 | 0.4839 | |
| GSE53622 | LINC00317 | 378828 | 93286 | 0.2547 | 0.0002 | |
| GSE53624 | LINC00317 | 378828 | 93286 | 0.3284 | 0.0000 | |
| GSE63941 | LINC00317 | 378828 | 1554983_at | 0.1176 | 0.4395 | |
| GSE77861 | LINC00317 | 378828 | 1554983_at | -0.2004 | 0.0641 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00317 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00317:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00317 | 378828 | 0 | 12 | 18 | |
| GSE20123 | LINC00317 | 378828 | 0 | 12 | 18 | |
| GSE43470 | LINC00317 | 378828 | 1 | 11 | 31 | |
| GSE46452 | LINC00317 | 378828 | 1 | 21 | 37 | |
| GSE47630 | LINC00317 | 378828 | 6 | 17 | 17 | |
| GSE54993 | LINC00317 | 378828 | 9 | 3 | 58 | |
| GSE54994 | LINC00317 | 378828 | 1 | 9 | 43 | |
| GSE60625 | LINC00317 | 378828 | 0 | 0 | 11 | |
| GSE74703 | LINC00317 | 378828 | 1 | 8 | 27 | |
| GSE74704 | LINC00317 | 378828 | 0 | 8 | 12 | |
| TCGA | LINC00317 | 378828 | 8 | 39 | 49 |
Total number of gains: 27; Total number of losses: 140; Total Number of normals: 321.
Somatic mutations of LINC00317:
Generating mutation plots.
Highly correlated genes for LINC00317:
Showing top 20/78 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00317 | SEC14L5 | 0.68795 | 3 | 0 | 3 |
| LINC00317 | MRGPRX2 | 0.685447 | 4 | 0 | 4 |
| LINC00317 | GPR50 | 0.661489 | 3 | 0 | 3 |
| LINC00317 | ACOX1 | 0.650112 | 3 | 0 | 3 |
| LINC00317 | ROM1 | 0.639842 | 3 | 0 | 3 |
| LINC00317 | OR51M1 | 0.639452 | 4 | 0 | 4 |
| LINC00317 | TTLL9 | 0.631971 | 3 | 0 | 3 |
| LINC00317 | TMEM8A | 0.626975 | 3 | 0 | 3 |
| LINC00317 | RPL34-AS1 | 0.616161 | 4 | 0 | 3 |
| LINC00317 | GALR3 | 0.615931 | 4 | 0 | 3 |
| LINC00317 | GPHA2 | 0.615254 | 3 | 0 | 3 |
| LINC00317 | CLDN17 | 0.60154 | 4 | 0 | 3 |
| LINC00317 | RNF180 | 0.598112 | 3 | 0 | 3 |
| LINC00317 | OR2C1 | 0.596126 | 4 | 0 | 4 |
| LINC00317 | NRAP | 0.596093 | 5 | 0 | 4 |
| LINC00317 | MCHR2-AS1 | 0.595217 | 3 | 0 | 3 |
| LINC00317 | UNC13B | 0.591078 | 3 | 0 | 3 |
| LINC00317 | TUBA8 | 0.584892 | 3 | 0 | 3 |
| LINC00317 | LINC01134 | 0.582313 | 4 | 0 | 3 |
| LINC00317 | CCKBR | 0.58018 | 4 | 0 | 3 |
For details and further investigation, click here
