| Full name: long intergenic non-protein coding RNA 339 | Alias Symbol: HSPC157 | ||
| Type: non-coding RNA | Cytoband: 1p36.12 | ||
| Entrez ID: 29092 | HGNC ID: HGNC:25011 | Ensembl Gene: ENSG00000218510 | OMIM ID: |
Expression of LINC00339:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00339 | 29092 | 219865_at | -0.2474 | 0.6931 | |
| GSE20347 | LINC00339 | 29092 | 219865_at | 0.1046 | 0.4699 | |
| GSE23400 | LINC00339 | 29092 | 219865_at | 0.0480 | 0.3948 | |
| GSE26886 | LINC00339 | 29092 | 219865_at | 0.1171 | 0.4544 | |
| GSE29001 | LINC00339 | 29092 | 219865_at | -0.0593 | 0.7218 | |
| GSE38129 | LINC00339 | 29092 | 219865_at | -0.0469 | 0.8067 | |
| GSE45670 | LINC00339 | 29092 | 219865_at | 0.0396 | 0.8827 | |
| GSE53622 | LINC00339 | 29092 | 73327 | 0.2873 | 0.0013 | |
| GSE53624 | LINC00339 | 29092 | 55521 | 0.3456 | 0.0008 | |
| GSE63941 | LINC00339 | 29092 | 219865_at | -0.8724 | 0.1697 | |
| GSE77861 | LINC00339 | 29092 | 219865_at | 0.0945 | 0.6988 | |
| SRP007169 | LINC00339 | 29092 | RNAseq | 0.1587 | 0.7476 | |
| SRP008496 | LINC00339 | 29092 | RNAseq | 0.4734 | 0.1131 | |
| SRP064894 | LINC00339 | 29092 | RNAseq | 0.4484 | 0.0448 | |
| SRP133303 | LINC00339 | 29092 | RNAseq | -0.0141 | 0.9498 | |
| SRP159526 | LINC00339 | 29092 | RNAseq | 0.8571 | 0.0099 | |
| SRP193095 | LINC00339 | 29092 | RNAseq | 0.3293 | 0.0089 | |
| SRP219564 | LINC00339 | 29092 | RNAseq | 0.3843 | 0.2976 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00339 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00339:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00339 | 29092 | 0 | 5 | 25 | |
| GSE20123 | LINC00339 | 29092 | 0 | 4 | 26 | |
| GSE43470 | LINC00339 | 29092 | 2 | 6 | 35 | |
| GSE46452 | LINC00339 | 29092 | 5 | 1 | 53 | |
| GSE47630 | LINC00339 | 29092 | 8 | 3 | 29 | |
| GSE54993 | LINC00339 | 29092 | 2 | 1 | 67 | |
| GSE54994 | LINC00339 | 29092 | 11 | 4 | 38 | |
| GSE60625 | LINC00339 | 29092 | 0 | 0 | 11 | |
| GSE74703 | LINC00339 | 29092 | 1 | 4 | 31 | |
| GSE74704 | LINC00339 | 29092 | 0 | 0 | 20 | |
| TCGA | LINC00339 | 29092 | 9 | 23 | 64 |
Total number of gains: 38; Total number of losses: 51; Total Number of normals: 399.
Somatic mutations of LINC00339:
Generating mutation plots.
Highly correlated genes for LINC00339:
Showing top 20/63 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00339 | NRP2 | 0.667626 | 3 | 0 | 3 |
| LINC00339 | OR10H3 | 0.632023 | 4 | 0 | 3 |
| LINC00339 | GABRA2 | 0.618112 | 3 | 0 | 3 |
| LINC00339 | MAP1LC3C | 0.61377 | 5 | 0 | 4 |
| LINC00339 | SMIM20 | 0.608068 | 4 | 0 | 3 |
| LINC00339 | KANSL3 | 0.603824 | 3 | 0 | 3 |
| LINC00339 | PIGK | 0.59363 | 4 | 0 | 3 |
| LINC00339 | WDR86 | 0.591004 | 3 | 0 | 3 |
| LINC00339 | OLFML1 | 0.589865 | 3 | 0 | 3 |
| LINC00339 | AFF2 | 0.588493 | 4 | 0 | 3 |
| LINC00339 | FUNDC2 | 0.58832 | 3 | 0 | 3 |
| LINC00339 | CRISPLD2 | 0.586309 | 4 | 0 | 3 |
| LINC00339 | PDZD3 | 0.58136 | 3 | 0 | 3 |
| LINC00339 | KCNC4 | 0.578863 | 4 | 0 | 3 |
| LINC00339 | FAM216A | 0.573173 | 3 | 0 | 3 |
| LINC00339 | AFMID | 0.573092 | 4 | 0 | 3 |
| LINC00339 | LUZP4 | 0.572706 | 4 | 0 | 3 |
| LINC00339 | ZNF460 | 0.571097 | 4 | 0 | 3 |
| LINC00339 | EFCAB1 | 0.567599 | 3 | 0 | 3 |
| LINC00339 | CCR4 | 0.566449 | 5 | 0 | 3 |
For details and further investigation, click here
