| Full name: small integral membrane protein 20 | Alias Symbol: PNX|MITRAC7 | ||
| Type: protein-coding gene | Cytoband: 4p15.2 | ||
| Entrez ID: 389203 | HGNC ID: HGNC:37260 | Ensembl Gene: ENSG00000250317 | OMIM ID: 617465 |
Expression of SMIM20:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SMIM20 | 389203 | 225014_at | -0.2609 | 0.6051 | |
| GSE26886 | SMIM20 | 389203 | 225014_at | 0.4057 | 0.2078 | |
| GSE45670 | SMIM20 | 389203 | 225014_at | -0.2239 | 0.2284 | |
| GSE53622 | SMIM20 | 389203 | 12055 | 0.2273 | 0.0201 | |
| GSE53624 | SMIM20 | 389203 | 12055 | 0.2777 | 0.0379 | |
| GSE63941 | SMIM20 | 389203 | 225014_at | -0.7032 | 0.0335 | |
| GSE77861 | SMIM20 | 389203 | 225014_at | 0.1262 | 0.7575 | |
| SRP007169 | SMIM20 | 389203 | RNAseq | 0.8623 | 0.1162 | |
| SRP008496 | SMIM20 | 389203 | RNAseq | 0.8346 | 0.0253 | |
| SRP064894 | SMIM20 | 389203 | RNAseq | 0.2422 | 0.4026 | |
| SRP133303 | SMIM20 | 389203 | RNAseq | 0.1293 | 0.3356 | |
| SRP159526 | SMIM20 | 389203 | RNAseq | 0.1434 | 0.5452 | |
| SRP193095 | SMIM20 | 389203 | RNAseq | -0.3312 | 0.0917 | |
| SRP219564 | SMIM20 | 389203 | RNAseq | -0.1021 | 0.8597 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by SMIM20 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of SMIM20:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SMIM20 | 389203 | 0 | 18 | 12 | |
| GSE20123 | SMIM20 | 389203 | 0 | 16 | 14 | |
| GSE43470 | SMIM20 | 389203 | 0 | 15 | 28 | |
| GSE46452 | SMIM20 | 389203 | 1 | 36 | 22 | |
| GSE47630 | SMIM20 | 389203 | 1 | 19 | 20 | |
| GSE54993 | SMIM20 | 389203 | 9 | 0 | 61 | |
| GSE54994 | SMIM20 | 389203 | 6 | 12 | 35 | |
| GSE60625 | SMIM20 | 389203 | 0 | 0 | 11 | |
| GSE74703 | SMIM20 | 389203 | 0 | 13 | 23 | |
| GSE74704 | SMIM20 | 389203 | 0 | 10 | 10 | |
| TCGA | SMIM20 | 389203 | 11 | 46 | 39 |
Total number of gains: 28; Total number of losses: 185; Total Number of normals: 275.
Somatic mutations of SMIM20:
Generating mutation plots.
Highly correlated genes for SMIM20:
Showing top 20/119 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SMIM20 | FBXO4 | 0.728445 | 3 | 0 | 3 |
| SMIM20 | SYT11 | 0.694646 | 3 | 0 | 3 |
| SMIM20 | MAK16 | 0.684368 | 3 | 0 | 3 |
| SMIM20 | PARK7 | 0.670374 | 3 | 0 | 3 |
| SMIM20 | ZBTB26 | 0.666938 | 3 | 0 | 3 |
| SMIM20 | PCDH9 | 0.656711 | 3 | 0 | 3 |
| SMIM20 | DDHD2 | 0.655493 | 4 | 0 | 3 |
| SMIM20 | NAP1L1 | 0.652037 | 3 | 0 | 3 |
| SMIM20 | SCAMP1-AS1 | 0.641805 | 4 | 0 | 3 |
| SMIM20 | ANGPT1 | 0.630777 | 3 | 0 | 3 |
| SMIM20 | BBS7 | 0.629193 | 3 | 0 | 3 |
| SMIM20 | HSD11B1 | 0.624563 | 4 | 0 | 4 |
| SMIM20 | RAB29 | 0.614235 | 4 | 0 | 3 |
| SMIM20 | SLC25A38 | 0.613063 | 5 | 0 | 4 |
| SMIM20 | ZC3H7A | 0.608177 | 4 | 0 | 4 |
| SMIM20 | LINC00339 | 0.608068 | 4 | 0 | 3 |
| SMIM20 | VPS13C | 0.605577 | 5 | 0 | 4 |
| SMIM20 | TMEM71 | 0.605577 | 5 | 0 | 4 |
| SMIM20 | PRIMPOL | 0.601948 | 4 | 0 | 3 |
| SMIM20 | SNX7 | 0.597452 | 3 | 0 | 3 |
For details and further investigation, click here
