| Full name: long intergenic non-protein coding RNA 342 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 2q11.1 | ||
| Entrez ID: 150759 | HGNC ID: HGNC:42470 | Ensembl Gene: ENSG00000232931 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00342:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00342 | 150759 | 1560661_x_at | 0.0867 | 0.9312 | |
| GSE20347 | LINC00342 | 150759 | 213703_at | 0.2545 | 0.2249 | |
| GSE23400 | LINC00342 | 150759 | 213703_at | -0.1882 | 0.0139 | |
| GSE26886 | LINC00342 | 150759 | 213703_at | -1.0570 | 0.0102 | |
| GSE29001 | LINC00342 | 150759 | 213703_at | 0.0448 | 0.9229 | |
| GSE38129 | LINC00342 | 150759 | 213703_at | 0.2233 | 0.3392 | |
| GSE45670 | LINC00342 | 150759 | 1560661_x_at | -0.0044 | 0.9860 | |
| GSE53622 | LINC00342 | 150759 | 3855 | -0.4647 | 0.0000 | |
| GSE53624 | LINC00342 | 150759 | 3855 | -0.5469 | 0.0000 | |
| GSE63941 | LINC00342 | 150759 | 1560659_at | 0.0421 | 0.9332 | |
| GSE77861 | LINC00342 | 150759 | 213703_at | -0.2106 | 0.5282 | |
| SRP007169 | LINC00342 | 150759 | RNAseq | 1.8293 | 0.0040 | |
| SRP008496 | LINC00342 | 150759 | RNAseq | 0.8499 | 0.0532 | |
| SRP064894 | LINC00342 | 150759 | RNAseq | -0.1164 | 0.6984 | |
| SRP133303 | LINC00342 | 150759 | RNAseq | 0.1753 | 0.4034 | |
| SRP159526 | LINC00342 | 150759 | RNAseq | 0.6490 | 0.2921 | |
| SRP193095 | LINC00342 | 150759 | RNAseq | -0.1638 | 0.4189 | |
| SRP219564 | LINC00342 | 150759 | RNAseq | -0.1744 | 0.6869 |
Upregulated datasets: 1; Downregulated datasets: 1.
Survival by LINC00342 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00342:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00342 | 150759 | 6 | 2 | 22 | |
| GSE20123 | LINC00342 | 150759 | 6 | 2 | 22 | |
| GSE43470 | LINC00342 | 150759 | 3 | 2 | 38 | |
| GSE46452 | LINC00342 | 150759 | 2 | 3 | 54 | |
| GSE47630 | LINC00342 | 150759 | 7 | 0 | 33 | |
| GSE54993 | LINC00342 | 150759 | 0 | 6 | 64 | |
| GSE54994 | LINC00342 | 150759 | 11 | 0 | 42 | |
| GSE60625 | LINC00342 | 150759 | 0 | 3 | 8 | |
| GSE74703 | LINC00342 | 150759 | 3 | 1 | 32 | |
| GSE74704 | LINC00342 | 150759 | 4 | 1 | 15 | |
| TCGA | LINC00342 | 150759 | 35 | 4 | 57 |
Total number of gains: 77; Total number of losses: 24; Total Number of normals: 387.
Somatic mutations of LINC00342:
Generating mutation plots.
Highly correlated genes for LINC00342:
Showing top 20/31 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00342 | AP1G2 | 0.670427 | 3 | 0 | 3 |
| LINC00342 | C4orf19 | 0.644611 | 3 | 0 | 3 |
| LINC00342 | ANKRD36B | 0.634789 | 10 | 0 | 6 |
| LINC00342 | SYMPK | 0.623368 | 5 | 0 | 4 |
| LINC00342 | AAK1 | 0.616175 | 3 | 0 | 3 |
| LINC00342 | RUSC1-AS1 | 0.606552 | 3 | 0 | 3 |
| LINC00342 | TAF15 | 0.590745 | 4 | 0 | 3 |
| LINC00342 | ZNF638 | 0.585741 | 5 | 0 | 3 |
| LINC00342 | SRSF11 | 0.580159 | 3 | 0 | 3 |
| LINC00342 | D2HGDH | 0.577778 | 4 | 0 | 3 |
| LINC00342 | FAM193B | 0.575135 | 5 | 0 | 3 |
| LINC00342 | ANKRD36C | 0.569678 | 5 | 0 | 4 |
| LINC00342 | ANKRD36 | 0.562081 | 6 | 0 | 4 |
| LINC00342 | LRRC37A3 | 0.561872 | 4 | 0 | 3 |
| LINC00342 | GON4L | 0.560728 | 6 | 0 | 5 |
| LINC00342 | ZNF493 | 0.55866 | 3 | 0 | 3 |
| LINC00342 | TTC21A | 0.558603 | 5 | 0 | 3 |
| LINC00342 | FBXO17 | 0.55477 | 5 | 0 | 4 |
| LINC00342 | CSAD | 0.551529 | 4 | 0 | 3 |
| LINC00342 | TECPR1 | 0.549983 | 5 | 0 | 3 |
For details and further investigation, click here
