| Full name: long intergenic non-protein coding RNA 421 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 13q12.11 | ||
| Entrez ID: 100287114 | HGNC ID: HGNC:42755 | Ensembl Gene: ENSG00000236834 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00421:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00421 | 100287114 | 1555196_at | 0.0667 | 0.8697 | |
| GSE26886 | LINC00421 | 100287114 | 1555196_at | -0.1747 | 0.1987 | |
| GSE45670 | LINC00421 | 100287114 | 1555196_at | 0.0447 | 0.6873 | |
| GSE53622 | LINC00421 | 100287114 | 50119 | 0.1721 | 0.2594 | |
| GSE53624 | LINC00421 | 100287114 | 50119 | 0.2352 | 0.0051 | |
| GSE63941 | LINC00421 | 100287114 | 1555196_at | 0.0587 | 0.7395 | |
| GSE77861 | LINC00421 | 100287114 | 1555196_at | -0.2593 | 0.0078 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00421 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00421:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00421 | 100287114 | 1 | 15 | 14 | |
| GSE20123 | LINC00421 | 100287114 | 1 | 14 | 15 | |
| GSE43470 | LINC00421 | 100287114 | 1 | 13 | 29 | |
| GSE46452 | LINC00421 | 100287114 | 0 | 33 | 26 | |
| GSE47630 | LINC00421 | 100287114 | 3 | 26 | 11 | |
| GSE54993 | LINC00421 | 100287114 | 11 | 2 | 57 | |
| GSE54994 | LINC00421 | 100287114 | 3 | 12 | 38 | |
| GSE60625 | LINC00421 | 100287114 | 0 | 3 | 8 | |
| GSE74703 | LINC00421 | 100287114 | 1 | 10 | 25 | |
| GSE74704 | LINC00421 | 100287114 | 0 | 12 | 8 | |
| TCGA | LINC00421 | 100287114 | 7 | 42 | 47 |
Total number of gains: 28; Total number of losses: 182; Total Number of normals: 278.
Somatic mutations of LINC00421:
Generating mutation plots.
Highly correlated genes for LINC00421:
Showing top 20/81 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00421 | FER1L5 | 0.703077 | 3 | 0 | 3 |
| LINC00421 | CACNA1G-AS1 | 0.666862 | 3 | 0 | 3 |
| LINC00421 | FSD2 | 0.665636 | 4 | 0 | 4 |
| LINC00421 | TMEM31 | 0.649985 | 3 | 0 | 3 |
| LINC00421 | LINC01231 | 0.645345 | 3 | 0 | 3 |
| LINC00421 | P2RX1 | 0.645039 | 3 | 0 | 3 |
| LINC00421 | FGA | 0.640177 | 3 | 0 | 3 |
| LINC00421 | SRRM4 | 0.639105 | 3 | 0 | 3 |
| LINC00421 | OR4D1 | 0.632099 | 3 | 0 | 3 |
| LINC00421 | LINC01210 | 0.62922 | 4 | 0 | 3 |
| LINC00421 | CHRNA2 | 0.620594 | 4 | 0 | 3 |
| LINC00421 | NLRP9 | 0.619355 | 4 | 0 | 4 |
| LINC00421 | KLHL40 | 0.618488 | 3 | 0 | 3 |
| LINC00421 | APCS | 0.618288 | 4 | 0 | 3 |
| LINC00421 | EPHA5-AS1 | 0.61563 | 4 | 0 | 3 |
| LINC00421 | TAS2R3 | 0.610778 | 4 | 0 | 4 |
| LINC00421 | TRIM3 | 0.609164 | 3 | 0 | 3 |
| LINC00421 | LINC00930 | 0.608989 | 4 | 0 | 3 |
| LINC00421 | PPM1E | 0.608369 | 3 | 0 | 3 |
| LINC00421 | TAS2R8 | 0.602928 | 3 | 0 | 3 |
For details and further investigation, click here
