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Severity: Warning

Message: exec(): Unable to fork [Rscript361 /data/webapp/var/www/html/ESCCdb/application/scripts/R/getGeneSurvival_Xena.R LINC01210 /data/webapp/var/www/html/ESCCdb/application/scripts/R/Xena_EXP_survival.RData application/survivalPlots/Xena]

Filename: controllers/Result_pages.php

Line Number: 123

Backtrace:

File: /data/webapp/var/www/html/ESCCdb/application/controllers/Result_pages.php
Line: 123
Function: exec

File: /data/webapp/var/www/html/ESCCdb/application/controllers/Result_pages.php
Line: 387
Function: drawSurvPlot

File: /data/webapp/var/www/html/ESCCdb/index.php
Line: 315
Function: require_once

Multi-Omics Database of ESCC

 

LINC01210

 

Full name: long intergenic non-protein coding RNA 1210 Alias Symbol: 
Type: non-coding RNA Cytoband: 3q22.3
Entrez ID: 100507274 HGNC ID: HGNC:49642 Ensembl Gene: ENSG00000239513 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC01210:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC01210 100507274 1556507_at -0.2810 0.2698
GSE26886 LINC01210 100507274 1556507_at -0.1470 0.3333
GSE45670 LINC01210 100507274 1556507_at -0.0722 0.5664
GSE53622 LINC01210 100507274 113554 0.3968 0.0400
GSE53624 LINC01210 100507274 113554 0.1725 0.0951
GSE63941 LINC01210 100507274 1556507_at 0.3256 0.0654
GSE77861 LINC01210 100507274 1556507_at -0.3672 0.0011

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by LINC01210 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of LINC01210:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC01210 100507274 16 0 14
GSE20123 LINC01210 100507274 16 0 14
GSE43470 LINC01210 100507274 22 0 21
GSE46452 LINC01210 100507274 15 4 40
GSE47630 LINC01210 100507274 18 3 19
GSE54993 LINC01210 100507274 2 8 60
GSE54994 LINC01210 100507274 31 2 20
GSE60625 LINC01210 100507274 0 6 5
GSE74703 LINC01210 100507274 19 0 17
GSE74704 LINC01210 100507274 11 0 9

Total number of gains: 150; Total number of losses: 23; Total Number of normals: 219.  

 

Somatic mutations of LINC01210:

 

Generating mutation plots.

 

Highly correlated genes for LINC01210:

 

Showing top 20/475 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC01210GALR30.7326303
LINC01210GALNT140.731647303
LINC01210TSSK20.727753303
LINC01210SFTA20.724415303
LINC01210CD300LB0.722815404
LINC01210C9orf1350.716941303
LINC01210C2orf160.7106403
LINC01210KNCN0.710359303
LINC01210TTTY110.710061303
LINC01210IL17RC0.707255505
LINC01210MMEL10.705496303
LINC01210CAST0.700902303
LINC01210DENND2C0.700562303
LINC01210ST3GAL30.698265404
LINC01210ENDOU0.696434303
LINC01210CXCR20.696313303
LINC01210HCG220.696038404
LINC01210ACPP0.690514303
LINC01210MVK0.690368505
LINC01210GYS20.690311303

For details and further investigation, click here