| Full name: long intergenic non-protein coding RNA 487 | Alias Symbol: FLJ42418 | ||
| Type: non-coding RNA | Cytoband: 2p25.2 | ||
| Entrez ID: 400941 | HGNC ID: HGNC:42947 | Ensembl Gene: ENSG00000205837 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00487:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00487 | 400941 | 231455_at | -0.1427 | 0.6399 | |
| GSE26886 | LINC00487 | 400941 | 231455_at | 0.1111 | 0.1903 | |
| GSE45670 | LINC00487 | 400941 | 231455_at | 0.1775 | 0.2487 | |
| GSE53622 | LINC00487 | 400941 | 32800 | 0.1915 | 0.0033 | |
| GSE53624 | LINC00487 | 400941 | 32800 | 0.0456 | 0.6173 | |
| GSE63941 | LINC00487 | 400941 | 231455_at | -0.0069 | 0.9524 | |
| GSE77861 | LINC00487 | 400941 | 231455_at | -0.0780 | 0.2938 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00487 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00487:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00487 | 400941 | 8 | 2 | 20 | |
| GSE20123 | LINC00487 | 400941 | 8 | 2 | 20 | |
| GSE43470 | LINC00487 | 400941 | 2 | 0 | 41 | |
| GSE46452 | LINC00487 | 400941 | 3 | 4 | 52 | |
| GSE47630 | LINC00487 | 400941 | 7 | 0 | 33 | |
| GSE54993 | LINC00487 | 400941 | 0 | 7 | 63 | |
| GSE54994 | LINC00487 | 400941 | 11 | 0 | 42 | |
| GSE60625 | LINC00487 | 400941 | 0 | 3 | 8 | |
| GSE74703 | LINC00487 | 400941 | 2 | 0 | 34 | |
| GSE74704 | LINC00487 | 400941 | 8 | 1 | 11 | |
| TCGA | LINC00487 | 400941 | 33 | 5 | 58 |
Total number of gains: 82; Total number of losses: 24; Total Number of normals: 382.
Somatic mutations of LINC00487:
Generating mutation plots.
Highly correlated genes for LINC00487:
Showing top 20/116 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00487 | BTBD19 | 0.697142 | 3 | 0 | 3 |
| LINC00487 | FFAR1 | 0.667636 | 4 | 0 | 3 |
| LINC00487 | CELF5 | 0.665724 | 3 | 0 | 3 |
| LINC00487 | NANOS3 | 0.657521 | 4 | 0 | 4 |
| LINC00487 | TTLL9 | 0.65268 | 3 | 0 | 3 |
| LINC00487 | GPR182 | 0.651257 | 4 | 0 | 3 |
| LINC00487 | TEX22 | 0.64837 | 3 | 0 | 3 |
| LINC00487 | TRIM46 | 0.646718 | 4 | 0 | 4 |
| LINC00487 | C16orf86 | 0.643627 | 4 | 0 | 4 |
| LINC00487 | ATP2A1 | 0.640065 | 3 | 0 | 3 |
| LINC00487 | PDZD7 | 0.638307 | 3 | 0 | 3 |
| LINC00487 | MROH7 | 0.637567 | 3 | 0 | 3 |
| LINC00487 | TSPAN16 | 0.636183 | 3 | 0 | 3 |
| LINC00487 | GCM2 | 0.627006 | 3 | 0 | 3 |
| LINC00487 | KCNC3 | 0.626633 | 3 | 0 | 3 |
| LINC00487 | NKX6-3 | 0.625907 | 3 | 0 | 3 |
| LINC00487 | GPX5 | 0.625806 | 3 | 0 | 3 |
| LINC00487 | MCHR2-AS1 | 0.62346 | 4 | 0 | 4 |
| LINC00487 | ZNF763 | 0.62322 | 3 | 0 | 3 |
| LINC00487 | JRK | 0.622608 | 3 | 0 | 3 |
For details and further investigation, click here
