| Full name: glial cells missing transcription factor 2 | Alias Symbol: hGCMb | ||
| Type: protein-coding gene | Cytoband: 6p24.2 | ||
| Entrez ID: 9247 | HGNC ID: HGNC:4198 | Ensembl Gene: ENSG00000124827 | OMIM ID: 603716 |
| Drug and gene relationship at DGIdb | |||
Expression of GCM2:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | GCM2 | 9247 | 220799_at | 0.0800 | 0.8109 | |
| GSE20347 | GCM2 | 9247 | 220799_at | -0.0252 | 0.5767 | |
| GSE23400 | GCM2 | 9247 | 220799_at | -0.0422 | 0.0085 | |
| GSE26886 | GCM2 | 9247 | 220799_at | 0.0643 | 0.4123 | |
| GSE29001 | GCM2 | 9247 | 220799_at | -0.1051 | 0.3709 | |
| GSE38129 | GCM2 | 9247 | 220799_at | -0.0295 | 0.4214 | |
| GSE45670 | GCM2 | 9247 | 220799_at | -0.0130 | 0.8497 | |
| GSE53622 | GCM2 | 9247 | 35065 | 0.3175 | 0.0001 | |
| GSE53624 | GCM2 | 9247 | 35065 | 0.0028 | 0.9857 | |
| GSE63941 | GCM2 | 9247 | 220799_at | 0.0884 | 0.4215 | |
| GSE77861 | GCM2 | 9247 | 220799_at | -0.0046 | 0.9545 | |
| GSE97050 | GCM2 | 9247 | A_23_P59285 | -0.0676 | 0.7732 | |
| TCGA | GCM2 | 9247 | RNAseq | 0.4607 | 0.7171 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by GCM2 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of GCM2:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | GCM2 | 9247 | 4 | 7 | 19 | |
| GSE20123 | GCM2 | 9247 | 4 | 7 | 19 | |
| GSE43470 | GCM2 | 9247 | 8 | 2 | 33 | |
| GSE46452 | GCM2 | 9247 | 1 | 10 | 48 | |
| GSE47630 | GCM2 | 9247 | 7 | 8 | 25 | |
| GSE54993 | GCM2 | 9247 | 1 | 1 | 68 | |
| GSE54994 | GCM2 | 9247 | 10 | 3 | 40 | |
| GSE60625 | GCM2 | 9247 | 0 | 1 | 10 | |
| GSE74703 | GCM2 | 9247 | 7 | 2 | 27 | |
| GSE74704 | GCM2 | 9247 | 2 | 3 | 15 | |
| TCGA | GCM2 | 9247 | 15 | 28 | 53 |
Total number of gains: 59; Total number of losses: 72; Total Number of normals: 357.
Somatic mutations of GCM2:
Generating mutation plots.
Highly correlated genes for GCM2:
Showing top 20/443 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| GCM2 | SLC39A5 | 0.886072 | 3 | 0 | 3 |
| GCM2 | SUN5 | 0.850071 | 3 | 0 | 3 |
| GCM2 | DCDC1 | 0.840523 | 3 | 0 | 3 |
| GCM2 | OR2A5 | 0.828942 | 3 | 0 | 3 |
| GCM2 | STRC | 0.82892 | 3 | 0 | 3 |
| GCM2 | PLA2G2C | 0.828242 | 3 | 0 | 3 |
| GCM2 | IL1F10 | 0.813855 | 3 | 0 | 3 |
| GCM2 | ZNF843 | 0.810167 | 3 | 0 | 3 |
| GCM2 | OR2T27 | 0.804898 | 3 | 0 | 3 |
| GCM2 | OR2T1 | 0.804512 | 3 | 0 | 3 |
| GCM2 | TBX4 | 0.801947 | 3 | 0 | 3 |
| GCM2 | NKX6-3 | 0.796858 | 3 | 0 | 3 |
| GCM2 | BTNL2 | 0.781771 | 5 | 0 | 4 |
| GCM2 | SYCN | 0.780028 | 3 | 0 | 3 |
| GCM2 | PABPN1L | 0.778638 | 3 | 0 | 3 |
| GCM2 | ST8SIA1 | 0.776746 | 3 | 0 | 3 |
| GCM2 | SLC5A4 | 0.770048 | 3 | 0 | 3 |
| GCM2 | BBC3 | 0.765313 | 3 | 0 | 3 |
| GCM2 | PNPLA7 | 0.763225 | 4 | 0 | 4 |
| GCM2 | YY2 | 0.763037 | 3 | 0 | 3 |
For details and further investigation, click here
