| Full name: long intergenic non-protein coding RNA 520 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 14q22.3 | ||
| Entrez ID: 645687 | HGNC ID: HGNC:19843 | Ensembl Gene: ENSG00000258791 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00520:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00520 | 645687 | 1555786_s_at | 0.2027 | 0.6711 | |
| GSE26886 | LINC00520 | 645687 | 1555786_s_at | -0.0122 | 0.9705 | |
| GSE45670 | LINC00520 | 645687 | 1555786_s_at | 1.8938 | 0.0001 | |
| GSE53622 | LINC00520 | 645687 | 145278 | 1.4452 | 0.0000 | |
| GSE53624 | LINC00520 | 645687 | 145278 | 1.9734 | 0.0000 | |
| GSE63941 | LINC00520 | 645687 | 1555786_s_at | 0.7133 | 0.0019 | |
| GSE77861 | LINC00520 | 645687 | 1555786_s_at | 0.0295 | 0.9133 | |
| SRP007169 | LINC00520 | 645687 | RNAseq | 5.0190 | 0.0005 |
Upregulated datasets: 4; Downregulated datasets: 0.
Survival by LINC00520 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00520:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00520 | 645687 | 8 | 3 | 19 | |
| GSE20123 | LINC00520 | 645687 | 8 | 3 | 19 | |
| GSE43470 | LINC00520 | 645687 | 8 | 1 | 34 | |
| GSE46452 | LINC00520 | 645687 | 16 | 3 | 40 | |
| GSE47630 | LINC00520 | 645687 | 11 | 10 | 19 | |
| GSE54993 | LINC00520 | 645687 | 3 | 8 | 59 | |
| GSE54994 | LINC00520 | 645687 | 19 | 4 | 30 | |
| GSE60625 | LINC00520 | 645687 | 0 | 2 | 9 | |
| GSE74703 | LINC00520 | 645687 | 7 | 1 | 28 | |
| GSE74704 | LINC00520 | 645687 | 3 | 2 | 15 | |
| TCGA | LINC00520 | 645687 | 32 | 14 | 50 |
Total number of gains: 115; Total number of losses: 51; Total Number of normals: 322.
Somatic mutations of LINC00520:
Generating mutation plots.
Highly correlated genes for LINC00520:
Showing top 20/224 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00520 | VWA3A | 0.835673 | 3 | 0 | 3 |
| LINC00520 | PNPLA2 | 0.77149 | 3 | 0 | 3 |
| LINC00520 | HPX | 0.754919 | 3 | 0 | 3 |
| LINC00520 | TSACC | 0.753966 | 3 | 0 | 3 |
| LINC00520 | MDFI | 0.717886 | 3 | 0 | 3 |
| LINC00520 | ELOVL7 | 0.709842 | 3 | 0 | 3 |
| LINC00520 | GLP1R | 0.706225 | 3 | 0 | 3 |
| LINC00520 | ZIC2 | 0.692545 | 3 | 0 | 3 |
| LINC00520 | EXOC3L2 | 0.684406 | 3 | 0 | 3 |
| LINC00520 | SPATA24 | 0.681027 | 4 | 0 | 3 |
| LINC00520 | GPR52 | 0.68085 | 3 | 0 | 3 |
| LINC00520 | C20orf203 | 0.680575 | 3 | 0 | 3 |
| LINC00520 | CPN2 | 0.678071 | 3 | 0 | 3 |
| LINC00520 | CYCS | 0.670287 | 3 | 0 | 3 |
| LINC00520 | GML | 0.666439 | 4 | 0 | 4 |
| LINC00520 | FUT1 | 0.665872 | 3 | 0 | 3 |
| LINC00520 | BEST1 | 0.664153 | 3 | 0 | 3 |
| LINC00520 | MORF4L2-AS1 | 0.657186 | 3 | 0 | 3 |
| LINC00520 | SAMD15 | 0.656209 | 3 | 0 | 3 |
| LINC00520 | SETD5 | 0.652117 | 3 | 0 | 3 |
For details and further investigation, click here
