| Full name: long intergenic non-protein coding RNA 853 | Alias Symbol: ncRNA-a4 | ||
| Type: non-coding RNA | Cytoband: 1p33 | ||
| Entrez ID: 100874253 | HGNC ID: HGNC:43716 | Ensembl Gene: ENSG00000224805 | OMIM ID: |
Expression of LINC00853:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00853 | 100874253 | 237224_at | 0.2211 | 0.4034 | |
| GSE26886 | LINC00853 | 100874253 | 237224_at | 0.2947 | 0.1123 | |
| GSE45670 | LINC00853 | 100874253 | 237224_at | 0.1960 | 0.0502 | |
| GSE53622 | LINC00853 | 100874253 | 115122 | 0.1772 | 0.2482 | |
| GSE53624 | LINC00853 | 100874253 | 115122 | 0.3122 | 0.0026 | |
| GSE63941 | LINC00853 | 100874253 | 237224_at | 0.3358 | 0.0939 | |
| GSE77861 | LINC00853 | 100874253 | 237224_at | 0.0198 | 0.8771 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00853 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00853:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00853 | 100874253 | 4 | 3 | 23 | |
| GSE20123 | LINC00853 | 100874253 | 4 | 2 | 24 | |
| GSE43470 | LINC00853 | 100874253 | 5 | 1 | 37 | |
| GSE46452 | LINC00853 | 100874253 | 2 | 1 | 56 | |
| GSE47630 | LINC00853 | 100874253 | 8 | 4 | 28 | |
| GSE54993 | LINC00853 | 100874253 | 0 | 1 | 69 | |
| GSE54994 | LINC00853 | 100874253 | 11 | 2 | 40 | |
| GSE60625 | LINC00853 | 100874253 | 0 | 0 | 11 | |
| GSE74703 | LINC00853 | 100874253 | 4 | 1 | 31 | |
| GSE74704 | LINC00853 | 100874253 | 2 | 0 | 18 | |
| TCGA | LINC00853 | 100874253 | 10 | 17 | 69 |
Total number of gains: 50; Total number of losses: 32; Total Number of normals: 406.
Somatic mutations of LINC00853:
Generating mutation plots.
Highly correlated genes for LINC00853:
Showing all 15 correlated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00853 | RPUSD1 | 0.64966 | 4 | 0 | 4 |
| LINC00853 | MYOM3 | 0.62724 | 4 | 0 | 3 |
| LINC00853 | LMTK3 | 0.626347 | 3 | 0 | 3 |
| LINC00853 | ZAR1 | 0.610822 | 3 | 0 | 3 |
| LINC00853 | MEX3D | 0.597452 | 3 | 0 | 3 |
| LINC00853 | TBX1 | 0.588587 | 4 | 0 | 3 |
| LINC00853 | NACC1 | 0.5834 | 4 | 0 | 3 |
| LINC00853 | NFKBIB | 0.582193 | 3 | 0 | 3 |
| LINC00853 | GJA8 | 0.570344 | 3 | 0 | 3 |
| LINC00853 | TRIM62 | 0.561063 | 4 | 0 | 3 |
| LINC00853 | NPRL3 | 0.545137 | 4 | 0 | 3 |
| LINC00853 | CCAR2 | 0.541063 | 5 | 0 | 3 |
| LINC00853 | MICALL1 | 0.539739 | 3 | 0 | 3 |
| LINC00853 | TOE1 | 0.536684 | 4 | 0 | 3 |
| LINC00853 | CDH15 | 0.514907 | 4 | 0 | 3 |
For details and further investigation, click here
