| Full name: PR/SET domain 13 | Alias Symbol: PFM10 | ||
| Type: protein-coding gene | Cytoband: 6q16.2 | ||
| Entrez ID: 59336 | HGNC ID: HGNC:13998 | Ensembl Gene: ENSG00000112238 | OMIM ID: 616741 |
| Drug and gene relationship at DGIdb | |||
Expression of PRDM13:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | PRDM13 | 59336 | 221168_at | 0.8661 | 0.1866 | |
| GSE20347 | PRDM13 | 59336 | 221168_at | 0.2649 | 0.0578 | |
| GSE23400 | PRDM13 | 59336 | 221168_at | 0.1033 | 0.0009 | |
| GSE26886 | PRDM13 | 59336 | 221168_at | 0.9962 | 0.0009 | |
| GSE29001 | PRDM13 | 59336 | 221168_at | 0.7590 | 0.0034 | |
| GSE38129 | PRDM13 | 59336 | 221168_at | 0.4823 | 0.0017 | |
| GSE45670 | PRDM13 | 59336 | 221168_at | 0.6755 | 0.0154 | |
| GSE53622 | PRDM13 | 59336 | 101879 | 0.2795 | 0.0002 | |
| GSE53624 | PRDM13 | 59336 | 101879 | 0.4630 | 0.0000 | |
| GSE63941 | PRDM13 | 59336 | 221168_at | 1.3311 | 0.2198 | |
| GSE77861 | PRDM13 | 59336 | 221168_at | 0.0375 | 0.7777 | |
| GSE97050 | PRDM13 | 59336 | A_33_P3214803 | 0.1294 | 0.6414 | |
| TCGA | PRDM13 | 59336 | RNAseq | 2.6024 | 0.0001 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by PRDM13 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of PRDM13:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | PRDM13 | 59336 | 2 | 3 | 25 | |
| GSE20123 | PRDM13 | 59336 | 2 | 2 | 26 | |
| GSE43470 | PRDM13 | 59336 | 3 | 0 | 40 | |
| GSE46452 | PRDM13 | 59336 | 2 | 11 | 46 | |
| GSE47630 | PRDM13 | 59336 | 8 | 6 | 26 | |
| GSE54993 | PRDM13 | 59336 | 3 | 2 | 65 | |
| GSE54994 | PRDM13 | 59336 | 8 | 8 | 37 | |
| GSE60625 | PRDM13 | 59336 | 0 | 1 | 10 | |
| GSE74703 | PRDM13 | 59336 | 2 | 0 | 34 | |
| GSE74704 | PRDM13 | 59336 | 1 | 0 | 19 | |
| TCGA | PRDM13 | 59336 | 7 | 24 | 65 |
Total number of gains: 38; Total number of losses: 57; Total Number of normals: 393.
Somatic mutations of PRDM13:
Generating mutation plots.
Highly correlated genes for PRDM13:
Showing top 20/385 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| PRDM13 | TMEM235 | 0.832781 | 3 | 0 | 3 |
| PRDM13 | C2CD4D | 0.831467 | 3 | 0 | 3 |
| PRDM13 | C19orf71 | 0.826488 | 3 | 0 | 3 |
| PRDM13 | MRGPRG | 0.825262 | 3 | 0 | 3 |
| PRDM13 | STRC | 0.805367 | 3 | 0 | 3 |
| PRDM13 | LHB | 0.787295 | 3 | 0 | 3 |
| PRDM13 | C1QL2 | 0.786215 | 3 | 0 | 3 |
| PRDM13 | TCTE1 | 0.783437 | 3 | 0 | 3 |
| PRDM13 | SORCS3 | 0.783255 | 3 | 0 | 3 |
| PRDM13 | GHSR | 0.782915 | 3 | 0 | 3 |
| PRDM13 | C9orf153 | 0.782315 | 3 | 0 | 3 |
| PRDM13 | DCDC1 | 0.771026 | 3 | 0 | 3 |
| PRDM13 | BLACE | 0.768968 | 3 | 0 | 3 |
| PRDM13 | DEFB121 | 0.759869 | 3 | 0 | 3 |
| PRDM13 | SPACA3 | 0.754447 | 3 | 0 | 3 |
| PRDM13 | PLA2G2C | 0.754371 | 3 | 0 | 3 |
| PRDM13 | YY2 | 0.753867 | 3 | 0 | 3 |
| PRDM13 | POM121L12 | 0.749532 | 4 | 0 | 4 |
| PRDM13 | SLC18A3 | 0.749371 | 3 | 0 | 3 |
| PRDM13 | SLC22A11 | 0.745119 | 3 | 0 | 3 |
For details and further investigation, click here
