| Full name: small Cajal body-specific RNA 17 | Alias Symbol: mgU12-22/U4-8|U91 | ||
| Type: non-coding RNA | Cytoband: 18q21.1 | ||
| Entrez ID: 677769 | HGNC ID: HGNC:32574 | Ensembl Gene: ENSG00000251992 | OMIM ID: 615645 |
| Drug and gene relationship at DGIdb | |||
Expression of SCARNA17:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SCARNA17 | 677769 | 240830_at | -0.5410 | 0.2324 | |
| GSE26886 | SCARNA17 | 677769 | 240830_at | 0.3961 | 0.0796 | |
| GSE45670 | SCARNA17 | 677769 | 240830_at | -0.5130 | 0.0001 | |
| GSE63941 | SCARNA17 | 677769 | 240830_at | -0.2859 | 0.0660 | |
| GSE77861 | SCARNA17 | 677769 | 240830_at | -0.0707 | 0.5626 | |
| SRP007169 | SCARNA17 | 677769 | RNAseq | -0.3301 | 0.5952 | |
| SRP133303 | SCARNA17 | 677769 | RNAseq | -0.7549 | 0.0021 | |
| SRP193095 | SCARNA17 | 677769 | RNAseq | -0.3371 | 0.1866 | |
| SRP219564 | SCARNA17 | 677769 | RNAseq | -1.0595 | 0.0127 | |
| TCGA | SCARNA17 | 677769 | RNAseq | -0.7304 | 0.0001 |
Upregulated datasets: 0; Downregulated datasets: 1.
Survival by SCARNA17 expression:
 |
| TCGA |
Note: Click image to view full size file.
Copy number change of SCARNA17:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SCARNA17 | 677769 | 0 | 9 | 21 | |
| GSE20123 | SCARNA17 | 677769 | 0 | 9 | 21 | |
| GSE43470 | SCARNA17 | 677769 | 0 | 4 | 39 | |
| GSE46452 | SCARNA17 | 677769 | 1 | 26 | 32 | |
| GSE47630 | SCARNA17 | 677769 | 5 | 20 | 15 | |
| GSE54993 | SCARNA17 | 677769 | 9 | 0 | 61 | |
| GSE54994 | SCARNA17 | 677769 | 1 | 17 | 35 | |
| GSE60625 | SCARNA17 | 677769 | 0 | 4 | 7 | |
| GSE74703 | SCARNA17 | 677769 | 0 | 4 | 32 | |
| GSE74704 | SCARNA17 | 677769 | 0 | 6 | 14 | |
| TCGA | SCARNA17|ENSG00000251992.1 | NA | 10 | 43 | 43 |
Total number of gains: 26; Total number of losses: 142; Total Number of normals: 320.
Somatic mutations of SCARNA17:
Generating mutation plots.
Highly correlated genes for SCARNA17:
Showing top 20/33 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SCARNA17 | AKAP4 | 0.647405 | 3 | 0 | 3 |
| SCARNA17 | THAP6 | 0.647337 | 3 | 0 | 3 |
| SCARNA17 | CD300LG | 0.643563 | 4 | 0 | 3 |
| SCARNA17 | SH3BP5-AS1 | 0.623784 | 3 | 0 | 3 |
| SCARNA17 | BOC | 0.619527 | 3 | 0 | 3 |
| SCARNA17 | ELN | 0.60589 | 3 | 0 | 3 |
| SCARNA17 | ST6GALNAC6 | 0.601648 | 3 | 0 | 3 |
| SCARNA17 | ERN2 | 0.600386 | 3 | 0 | 3 |
| SCARNA17 | CXCL12 | 0.598099 | 3 | 0 | 3 |
| SCARNA17 | KCND3 | 0.592113 | 3 | 0 | 3 |
| SCARNA17 | ARMC5 | 0.58892 | 3 | 0 | 3 |
| SCARNA17 | ZNF568 | 0.583962 | 4 | 0 | 3 |
| SCARNA17 | RERGL | 0.579219 | 3 | 0 | 3 |
| SCARNA17 | JSRP1 | 0.57481 | 4 | 0 | 3 |
| SCARNA17 | FBXO3 | 0.573495 | 3 | 0 | 3 |
| SCARNA17 | ENTPD2 | 0.564598 | 4 | 0 | 3 |
| SCARNA17 | SYNPO2 | 0.560576 | 3 | 0 | 3 |
| SCARNA17 | COL20A1 | 0.560544 | 3 | 0 | 3 |
| SCARNA17 | ROR1 | 0.560302 | 3 | 0 | 3 |
| SCARNA17 | USO1 | 0.557446 | 4 | 0 | 3 |
For details and further investigation, click here
