| Full name: collagen type XX alpha 1 chain | Alias Symbol: KIAA1510 | ||
| Type: protein-coding gene | Cytoband: 20q13.33 | ||
| Entrez ID: 57642 | HGNC ID: HGNC:14670 | Ensembl Gene: ENSG00000101203 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of COL20A1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | COL20A1 | 57642 | 232733_s_at | -0.0375 | 0.8690 | |
| GSE26886 | COL20A1 | 57642 | 232733_s_at | 0.2396 | 0.0382 | |
| GSE45670 | COL20A1 | 57642 | 232733_s_at | 0.1279 | 0.1077 | |
| GSE53622 | COL20A1 | 57642 | 135411 | -0.3562 | 0.0000 | |
| GSE53624 | COL20A1 | 57642 | 135411 | -0.6907 | 0.0000 | |
| GSE63941 | COL20A1 | 57642 | 232733_s_at | 0.1486 | 0.2410 | |
| GSE77861 | COL20A1 | 57642 | 232733_s_at | 0.0058 | 0.9689 | |
| GSE97050 | COL20A1 | 57642 | A_33_P3395952 | 0.0558 | 0.8040 | |
| SRP133303 | COL20A1 | 57642 | RNAseq | 0.1458 | 0.5938 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by COL20A1 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of COL20A1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | COL20A1 | 57642 | 14 | 2 | 14 | |
| GSE20123 | COL20A1 | 57642 | 14 | 2 | 14 | |
| GSE43470 | COL20A1 | 57642 | 11 | 1 | 31 | |
| GSE46452 | COL20A1 | 57642 | 35 | 0 | 24 | |
| GSE47630 | COL20A1 | 57642 | 25 | 1 | 14 | |
| GSE54993 | COL20A1 | 57642 | 0 | 17 | 53 | |
| GSE54994 | COL20A1 | 57642 | 29 | 0 | 24 | |
| GSE60625 | COL20A1 | 57642 | 0 | 0 | 11 | |
| GSE74703 | COL20A1 | 57642 | 10 | 0 | 26 | |
| GSE74704 | COL20A1 | 57642 | 11 | 0 | 9 | |
| TCGA | COL20A1 | 57642 | 44 | 4 | 48 |
Total number of gains: 193; Total number of losses: 27; Total Number of normals: 268.
Somatic mutations of COL20A1:
Generating mutation plots.
Highly correlated genes for COL20A1:
Showing top 20/348 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| COL20A1 | BARHL2 | 0.831449 | 3 | 0 | 3 |
| COL20A1 | CLEC18C | 0.823371 | 3 | 0 | 3 |
| COL20A1 | KRTAP4-8 | 0.779994 | 3 | 0 | 3 |
| COL20A1 | NOTO | 0.76791 | 3 | 0 | 3 |
| COL20A1 | NRG3 | 0.767879 | 3 | 0 | 3 |
| COL20A1 | CRYBB3 | 0.76327 | 4 | 0 | 4 |
| COL20A1 | KBTBD13 | 0.761811 | 3 | 0 | 3 |
| COL20A1 | MAFG | 0.760506 | 3 | 0 | 3 |
| COL20A1 | PTCRA | 0.751172 | 3 | 0 | 3 |
| COL20A1 | KRTAP5-11 | 0.748541 | 3 | 0 | 3 |
| COL20A1 | NPM2 | 0.743296 | 3 | 0 | 3 |
| COL20A1 | FAM71F1 | 0.738307 | 3 | 0 | 3 |
| COL20A1 | DCD | 0.73715 | 5 | 0 | 4 |
| COL20A1 | FXYD2 | 0.735125 | 4 | 0 | 4 |
| COL20A1 | MRGPRE | 0.734397 | 3 | 0 | 3 |
| COL20A1 | FAM163B | 0.727474 | 3 | 0 | 3 |
| COL20A1 | KRTAP5-4 | 0.726431 | 3 | 0 | 3 |
| COL20A1 | CSHL1 | 0.723606 | 3 | 0 | 3 |
| COL20A1 | MGAT5B | 0.721196 | 5 | 0 | 4 |
| COL20A1 | GRAP | 0.720902 | 3 | 0 | 3 |
For details and further investigation, click here
